Gene : Glyma.11G132800 G. max Wm82.a2.v1
Defline:  (1 of 4) PF04554 - Extensin-like region (Extensin_2) Genomic Order:  1328
Name:  ? Glyma.11G132800 Secondary Identifier:  ? PAC:30529317
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Ontology Annotation Displayer

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Genomics

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Expression

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Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G132800 0.5kb upstream 0.5kb upstream 1298 true Chr11: 10168945-10170242 Glycine max
Glyma.11G132800 0.5kb upstream 0.5kb upstream 500 false Chr11: 10168945-10169444 Glycine max
Glyma.11G132800 0.5kb downstream 0.5kb downstream 1298 true Chr11: 10169445-10170742 Glycine max
Glyma.11G132800 0.5kb downstream 0.5kb downstream 500 false Chr11: 10170243-10170742 Glycine max
Glyma.11G132800 1.0kb upstream 1.0kb upstream 1798 true Chr11: 10168445-10170242 Glycine max
Glyma.11G132800 1.0kb upstream 1.0kb upstream 1000 false Chr11: 10168445-10169444 Glycine max
Glyma.11G132800 1.0kb downstream 1.0kb downstream 1798 true Chr11: 10169445-10171242 Glycine max
Glyma.11G132800 1.0kb downstream 1.0kb downstream 1000 false Chr11: 10170243-10171242 Glycine max
Glyma.11G132800 2.0kb upstream 2.0kb upstream 2798 true Chr11: 10167445-10170242 Glycine max
Glyma.11G132800 2.0kb upstream 2.0kb upstream 2000 false Chr11: 10167445-10169444 Glycine max
Glyma.11G132800 2.0kb downstream 2.0kb downstream 2798 true Chr11: 10169445-10172242 Glycine max
Glyma.11G132800 2.0kb downstream 2.0kb downstream 2000 false Chr11: 10170243-10172242 Glycine max
Glyma.11G132800 5.0kb upstream 5.0kb upstream 5798 true Chr11: 10164445-10170242 Glycine max
Glyma.11G132800 5.0kb upstream 5.0kb upstream 5000 false Chr11: 10164445-10169444 Glycine max
Glyma.11G132800 5.0kb downstream 5.0kb downstream 5798 true Chr11: 10169445-10175242 Glycine max
Glyma.11G132800 5.0kb downstream 5.0kb downstream 5000 false Chr11: 10170243-10175242 Glycine max
Glyma.11G132800 10.0kb upstream 10.0kb upstream 10798 true Chr11: 10159445-10170242 Glycine max
Glyma.11G132800 10.0kb upstream 10.0kb upstream 10000 false Chr11: 10159445-10169444 Glycine max
Glyma.11G132800 10.0kb downstream 10.0kb downstream 10798 true Chr11: 10169445-10180242 Glycine max
Glyma.11G132800 10.0kb downstream 10.0kb downstream 10000 false Chr11: 10170243-10180242 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122246870 5265 Fabidae Singleton cluster - no MSA
124072659 5270 Rosid View MSA
123753028 5271 Pentapetalae View MSA
122796591 5272 Eudicot View MSA
122051631 5273 Angiosperm View MSA
121349317 5274 Embryophyte View MSA
123381274 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 169.434 0.0 459.275 High High
cufflinks 87.8208 0.0 234.489 High  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 93.9929 0.0 250.767 High  
cufflinks 0.018     Low Low
cufflinks 47.286     High High
cufflinks 0.018     Low Low
cufflinks 2.763        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 6.351     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 91.016     High High
cufflinks 0.013     Low Low
cufflinks 0.053     Low  
cufflinks 0.066     Low  
cufflinks 53.954     High High
cufflinks 0.062     Low  
cufflinks 0.039     Low  
cufflinks 90.733     High High
cufflinks 0.036     Low  
cufflinks 459.332     High High

0 Strain