Gene : Glyma.11G122900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12970 - TUMOR NECROSIS FACTOR SUPERFAMILY, MEMBER 5-INDUCED PROTEIN 1 CLAST3 Genomic Order:  1229
Name:  ? Glyma.11G122900 Secondary Identifier:  ? PAC:30527780
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G122900 0.5kb upstream 0.5kb upstream 4467 true Chr11: 9362483-9366949 Glycine max
Glyma.11G122900 0.5kb upstream 0.5kb upstream 500 false Chr11: 9366450-9366949 Glycine max
Glyma.11G122900 0.5kb downstream 0.5kb downstream 4467 true Chr11: 9361983-9366449 Glycine max
Glyma.11G122900 0.5kb downstream 0.5kb downstream 500 false Chr11: 9361983-9362482 Glycine max
Glyma.11G122900 1.0kb upstream 1.0kb upstream 4967 true Chr11: 9362483-9367449 Glycine max
Glyma.11G122900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 9366450-9367449 Glycine max
Glyma.11G122900 1.0kb downstream 1.0kb downstream 4967 true Chr11: 9361483-9366449 Glycine max
Glyma.11G122900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 9361483-9362482 Glycine max
Glyma.11G122900 2.0kb upstream 2.0kb upstream 5967 true Chr11: 9362483-9368449 Glycine max
Glyma.11G122900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 9366450-9368449 Glycine max
Glyma.11G122900 2.0kb downstream 2.0kb downstream 5967 true Chr11: 9360483-9366449 Glycine max
Glyma.11G122900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 9360483-9362482 Glycine max
Glyma.11G122900 5.0kb upstream 5.0kb upstream 8967 true Chr11: 9362483-9371449 Glycine max
Glyma.11G122900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 9366450-9371449 Glycine max
Glyma.11G122900 5.0kb downstream 5.0kb downstream 8967 true Chr11: 9357483-9366449 Glycine max
Glyma.11G122900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 9357483-9362482 Glycine max
Glyma.11G122900 10.0kb upstream 10.0kb upstream 13967 true Chr11: 9362483-9376449 Glycine max
Glyma.11G122900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 9366450-9376449 Glycine max
Glyma.11G122900 10.0kb downstream 10.0kb downstream 13967 true Chr11: 9352483-9366449 Glycine max
Glyma.11G122900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 9352483-9362482 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301325 5265 Fabidae View MSA
124073365 5270 Rosid View MSA
123738870 5271 Pentapetalae View MSA
122790398 5272 Eudicot View MSA
122043036 5273 Angiosperm View MSA
121344362 5274 Embryophyte View MSA
123425402 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.91675 0.0 25.6664   Low
cufflinks 17.2314 0.0 46.6904   High
cufflinks 11.0972 0.0 31.041    
cufflinks 10.3006 0.0 29.0799    
cufflinks 14.3019 0.0 39.2982    
cufflinks 20.5886 0.0 55.3363   High
cufflinks 14.8457 0.0 40.6957    
cufflinks 12.8404 0.0 35.5078    
cufflinks 11.6721 0.0 32.5836    
cufflinks 3.692        
cufflinks 1.969       Low
cufflinks 3.443        
cufflinks 5.086       High
cufflinks 6.77     High High
cufflinks 1.305       Low
cufflinks 3.565        
cufflinks 2.017       Low
cufflinks 3.568        
cufflinks 4.879       High
cufflinks 3.821        
cufflinks 2.506        
cufflinks 3.415        
cufflinks 3.395        
cufflinks 2.88        
cufflinks 3.856        
cufflinks 2.817        

0 Strain