Gene : Glyma.11G162200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR33149:SF4 - PHOTOSYSTEM Q(B) PROTEIN Genomic Order:  1622
Name:  ? Glyma.11G162200 Secondary Identifier:  ? PAC:30531166
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PHOTOALL-PWY Glycine max pathologic  
Gmax PWY-101 Glycine max pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G162200 0.5kb upstream 0.5kb upstream 1371 true Chr11: 15042033-15043403 Glycine max
Glyma.11G162200 0.5kb upstream 0.5kb upstream 500 false Chr11: 15042904-15043403 Glycine max
Glyma.11G162200 0.5kb downstream 0.5kb downstream 1371 true Chr11: 15041533-15042903 Glycine max
Glyma.11G162200 0.5kb downstream 0.5kb downstream 500 false Chr11: 15041533-15042032 Glycine max
Glyma.11G162200 1.0kb upstream 1.0kb upstream 1871 true Chr11: 15042033-15043903 Glycine max
Glyma.11G162200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 15042904-15043903 Glycine max
Glyma.11G162200 1.0kb downstream 1.0kb downstream 1871 true Chr11: 15041033-15042903 Glycine max
Glyma.11G162200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 15041033-15042032 Glycine max
Glyma.11G162200 2.0kb upstream 2.0kb upstream 2871 true Chr11: 15042033-15044903 Glycine max
Glyma.11G162200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 15042904-15044903 Glycine max
Glyma.11G162200 2.0kb downstream 2.0kb downstream 2871 true Chr11: 15040033-15042903 Glycine max
Glyma.11G162200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 15040033-15042032 Glycine max
Glyma.11G162200 5.0kb upstream 5.0kb upstream 5871 true Chr11: 15042033-15047903 Glycine max
Glyma.11G162200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 15042904-15047903 Glycine max
Glyma.11G162200 5.0kb downstream 5.0kb downstream 5871 true Chr11: 15037033-15042903 Glycine max
Glyma.11G162200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 15037033-15042032 Glycine max
Glyma.11G162200 10.0kb upstream 10.0kb upstream 10871 true Chr11: 15042033-15052903 Glycine max
Glyma.11G162200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 15042904-15052903 Glycine max
Glyma.11G162200 10.0kb downstream 10.0kb downstream 10871 true Chr11: 15032033-15042903 Glycine max
Glyma.11G162200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 15032033-15042032 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298849 5265 Fabidae View MSA
124042149 5270 Rosid View MSA
123753555 5271 Pentapetalae View MSA
122797414 5272 Eudicot View MSA
122047558 5273 Angiosperm View MSA
121350331 5274 Embryophyte View MSA
123381681 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.8868 0.0 55.2764   High
cufflinks 1.4144 0.0 5.32062    
cufflinks 5.31251 0.0 18.2548    
cufflinks 54.7661 0.0 146.682 High High
cufflinks 0.0846963 0.0 0.365712 Low Low
cufflinks 0.0919599 0.0 0.394096 Low Low
cufflinks 3.08722 0.0 11.1408    
cufflinks 1.44937 0.0 5.4469    
cufflinks 0.0496375 0.0 0.22451 Low Low
cufflinks 1.548        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.574        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.077       Low
cufflinks 0.02     Low Low
cufflinks 0.722        
cufflinks 0.066     Low Low
cufflinks 0.631        
cufflinks 0.559        
cufflinks 0.657        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.861        
cufflinks 2.742       High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.784        
cufflinks 0.0     Not Expressed Not Expressed

0 Strain