Gene : Glyma.11G147700 G. max Wm82.a2.v1
Defline:  (1 of 9) PF06830 - Root cap (Root_cap) Genomic Order:  1477
Name:  ? Glyma.11G147700 Secondary Identifier:  ? PAC:30531459
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G147700 0.5kb upstream 0.5kb upstream 2484 true Chr11: 11395564-11398047 Glycine max
Glyma.11G147700 0.5kb upstream 0.5kb upstream 500 false Chr11: 11395564-11396063 Glycine max
Glyma.11G147700 0.5kb downstream 0.5kb downstream 2484 true Chr11: 11396064-11398547 Glycine max
Glyma.11G147700 0.5kb downstream 0.5kb downstream 500 false Chr11: 11398048-11398547 Glycine max
Glyma.11G147700 1.0kb upstream 1.0kb upstream 2984 true Chr11: 11395064-11398047 Glycine max
Glyma.11G147700 1.0kb upstream 1.0kb upstream 1000 false Chr11: 11395064-11396063 Glycine max
Glyma.11G147700 1.0kb downstream 1.0kb downstream 2984 true Chr11: 11396064-11399047 Glycine max
Glyma.11G147700 1.0kb downstream 1.0kb downstream 1000 false Chr11: 11398048-11399047 Glycine max
Glyma.11G147700 2.0kb upstream 2.0kb upstream 3984 true Chr11: 11394064-11398047 Glycine max
Glyma.11G147700 2.0kb upstream 2.0kb upstream 2000 false Chr11: 11394064-11396063 Glycine max
Glyma.11G147700 2.0kb downstream 2.0kb downstream 3984 true Chr11: 11396064-11400047 Glycine max
Glyma.11G147700 2.0kb downstream 2.0kb downstream 2000 false Chr11: 11398048-11400047 Glycine max
Glyma.11G147700 5.0kb upstream 5.0kb upstream 6984 true Chr11: 11391064-11398047 Glycine max
Glyma.11G147700 5.0kb upstream 5.0kb upstream 5000 false Chr11: 11391064-11396063 Glycine max
Glyma.11G147700 5.0kb downstream 5.0kb downstream 6984 true Chr11: 11396064-11403047 Glycine max
Glyma.11G147700 5.0kb downstream 5.0kb downstream 5000 false Chr11: 11398048-11403047 Glycine max
Glyma.11G147700 10.0kb upstream 10.0kb upstream 11984 true Chr11: 11386064-11398047 Glycine max
Glyma.11G147700 10.0kb upstream 10.0kb upstream 10000 false Chr11: 11386064-11396063 Glycine max
Glyma.11G147700 10.0kb downstream 10.0kb downstream 11984 true Chr11: 11396064-11408047 Glycine max
Glyma.11G147700 10.0kb downstream 10.0kb downstream 10000 false Chr11: 11398048-11408047 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313139 5265 Fabidae View MSA
124061597 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0122208 0.0 0.0554217 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 40.1411 0.0 110.688 High  
cufflinks 71.9414 0.0 212.354 High High
cufflinks 0.0107944 0.0 0.0494407 Low  
cufflinks 0.0121177 0.0 0.0548441 Low  
cufflinks 14.8801 0.0 39.7912    
cufflinks 0.008     Low  
cufflinks 0.953        
cufflinks 0.008     Low  
cufflinks 77.311     High High
cufflinks 153.973     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.019     Low  
cufflinks 2.447        
cufflinks 0.005     Low Low
cufflinks 0.015     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 1.386        
cufflinks 0.029     Low  
cufflinks 0.019     Low  
cufflinks 1.349        
cufflinks 0.01     Low  
cufflinks 6.566     High  

0 Strain