Gene : Glyma.11G180900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR23088//PTHR23088:SF31 - NITRILASE-RELATED Genomic Order:  1809
Name:  ? Glyma.11G180900 Secondary Identifier:  ? PAC:30528227
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ASPARAGINE-DEG1-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G180900 0.5kb upstream 0.5kb upstream 4960 true Chr11: 24764000-24768959 Glycine max
Glyma.11G180900 0.5kb upstream 0.5kb upstream 500 false Chr11: 24764000-24764499 Glycine max
Glyma.11G180900 0.5kb downstream 0.5kb downstream 4960 true Chr11: 24764500-24769459 Glycine max
Glyma.11G180900 0.5kb downstream 0.5kb downstream 500 false Chr11: 24768960-24769459 Glycine max
Glyma.11G180900 1.0kb upstream 1.0kb upstream 5460 true Chr11: 24763500-24768959 Glycine max
Glyma.11G180900 1.0kb upstream 1.0kb upstream 1000 false Chr11: 24763500-24764499 Glycine max
Glyma.11G180900 1.0kb downstream 1.0kb downstream 5460 true Chr11: 24764500-24769959 Glycine max
Glyma.11G180900 1.0kb downstream 1.0kb downstream 1000 false Chr11: 24768960-24769959 Glycine max
Glyma.11G180900 2.0kb upstream 2.0kb upstream 6460 true Chr11: 24762500-24768959 Glycine max
Glyma.11G180900 2.0kb upstream 2.0kb upstream 2000 false Chr11: 24762500-24764499 Glycine max
Glyma.11G180900 2.0kb downstream 2.0kb downstream 6460 true Chr11: 24764500-24770959 Glycine max
Glyma.11G180900 2.0kb downstream 2.0kb downstream 2000 false Chr11: 24768960-24770959 Glycine max
Glyma.11G180900 5.0kb upstream 5.0kb upstream 9460 true Chr11: 24759500-24768959 Glycine max
Glyma.11G180900 5.0kb upstream 5.0kb upstream 5000 false Chr11: 24759500-24764499 Glycine max
Glyma.11G180900 5.0kb downstream 5.0kb downstream 9460 true Chr11: 24764500-24773959 Glycine max
Glyma.11G180900 5.0kb downstream 5.0kb downstream 5000 false Chr11: 24768960-24773959 Glycine max
Glyma.11G180900 10.0kb upstream 10.0kb upstream 14460 true Chr11: 24754500-24768959 Glycine max
Glyma.11G180900 10.0kb upstream 10.0kb upstream 10000 false Chr11: 24754500-24764499 Glycine max
Glyma.11G180900 10.0kb downstream 10.0kb downstream 14460 true Chr11: 24764500-24778959 Glycine max
Glyma.11G180900 10.0kb downstream 10.0kb downstream 10000 false Chr11: 24768960-24778959 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301030 5265 Fabidae View MSA
124063597 5270 Rosid View MSA
123751549 5271 Pentapetalae View MSA
122796633 5272 Eudicot View MSA
122043736 5273 Angiosperm View MSA
121347314 5274 Embryophyte View MSA
123380526 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.53691 0.0 18.7777    
cufflinks 5.66471 0.0 16.5949    
cufflinks 7.11881 0.0 20.2261   High
cufflinks 3.88872 0.0 11.9704    
cufflinks 1.92081 0.0 6.50368    
cufflinks 0.804527 0.0 2.9264   Low
cufflinks 3.12855 0.0 9.92389    
cufflinks 5.341 0.0 15.7325    
cufflinks 1.08912 0.0 3.88339   Low
cufflinks 1.316        
cufflinks 0.968        
cufflinks 2.255        
cufflinks 0.51        
cufflinks 0.436        
cufflinks 0.075       Low
cufflinks 2.388        
cufflinks 0.34       Low
cufflinks 1.916        
cufflinks 1.937        
cufflinks 2.729        
cufflinks 0.744        
cufflinks 2.847        
cufflinks 2.02        
cufflinks 2.019        
cufflinks 2.734        
cufflinks 0.651        

0 Strain