Gene : Glyma.11G221200 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31100:SF13 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 15 Genomic Order:  2212
Name:  ? Glyma.11G221200 Secondary Identifier:  ? PAC:30529339
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G221200 0.5kb upstream 0.5kb upstream 3970 true Chr11: 31641566-31645535 Glycine max
Glyma.11G221200 0.5kb upstream 0.5kb upstream 500 false Chr11: 31645036-31645535 Glycine max
Glyma.11G221200 0.5kb downstream 0.5kb downstream 3970 true Chr11: 31641066-31645035 Glycine max
Glyma.11G221200 0.5kb downstream 0.5kb downstream 500 false Chr11: 31641066-31641565 Glycine max
Glyma.11G221200 1.0kb upstream 1.0kb upstream 4470 true Chr11: 31641566-31646035 Glycine max
Glyma.11G221200 1.0kb upstream 1.0kb upstream 1000 false Chr11: 31645036-31646035 Glycine max
Glyma.11G221200 1.0kb downstream 1.0kb downstream 4470 true Chr11: 31640566-31645035 Glycine max
Glyma.11G221200 1.0kb downstream 1.0kb downstream 1000 false Chr11: 31640566-31641565 Glycine max
Glyma.11G221200 2.0kb upstream 2.0kb upstream 5470 true Chr11: 31641566-31647035 Glycine max
Glyma.11G221200 2.0kb upstream 2.0kb upstream 2000 false Chr11: 31645036-31647035 Glycine max
Glyma.11G221200 2.0kb downstream 2.0kb downstream 5470 true Chr11: 31639566-31645035 Glycine max
Glyma.11G221200 2.0kb downstream 2.0kb downstream 2000 false Chr11: 31639566-31641565 Glycine max
Glyma.11G221200 5.0kb upstream 5.0kb upstream 8470 true Chr11: 31641566-31650035 Glycine max
Glyma.11G221200 5.0kb upstream 5.0kb upstream 5000 false Chr11: 31645036-31650035 Glycine max
Glyma.11G221200 5.0kb downstream 5.0kb downstream 8470 true Chr11: 31636566-31645035 Glycine max
Glyma.11G221200 5.0kb downstream 5.0kb downstream 5000 false Chr11: 31636566-31641565 Glycine max
Glyma.11G221200 10.0kb upstream 10.0kb upstream 13470 true Chr11: 31641566-31655035 Glycine max
Glyma.11G221200 10.0kb upstream 10.0kb upstream 10000 false Chr11: 31645036-31655035 Glycine max
Glyma.11G221200 10.0kb downstream 10.0kb downstream 13470 true Chr11: 31631566-31645035 Glycine max
Glyma.11G221200 10.0kb downstream 10.0kb downstream 10000 false Chr11: 31631566-31641565 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303036 5265 Fabidae View MSA
124060975 5270 Rosid View MSA
123751689 5271 Pentapetalae View MSA
122796160 5272 Eudicot View MSA
122048201 5273 Angiosperm View MSA
121348557 5274 Embryophyte View MSA
123380913 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.55003 0.0 4.97536    
cufflinks 0.392241 0.0 1.4357   Low
cufflinks 2.57021 0.0 7.68439    
cufflinks 0.89997 0.0 3.09128   Low
cufflinks 3.93318 0.0 11.1157    
cufflinks 5.20041 0.0 14.3254   High
cufflinks 4.41979 0.0 12.3571    
cufflinks 1.76183 0.0 5.55793    
cufflinks 4.31538 0.0 12.0958    
cufflinks 0.242        
cufflinks 14.361     High High
cufflinks 1.257        
cufflinks 1.842        
cufflinks 3.007        
cufflinks 4.131        
cufflinks 0.256        
cufflinks 4.249        
cufflinks 0.357        
cufflinks 0.188        
cufflinks 0.166        
cufflinks 18.422     High High
cufflinks 0.088     Low Low
cufflinks 0.042     Low Low
cufflinks 16.373     High High
cufflinks 0.253        
cufflinks 12.033     High High

0 Strain