Gene : Glyma.11G256400 G. max Wm82.a2.v1
Defline:  (1 of 2) KOG4411 - Phytoene/squalene synthetase Genomic Order:  2564
Name:  ? Glyma.11G256400 Secondary Identifier:  ? PAC:30529802
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax CAROTENOID-PWY Glycine max pathologic  
Gmax PWY-6475 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G256400 0.5kb upstream 0.5kb upstream 2423 true Chr11: 34614957-34617379 Glycine max
Glyma.11G256400 0.5kb upstream 0.5kb upstream 500 false Chr11: 34616880-34617379 Glycine max
Glyma.11G256400 0.5kb downstream 0.5kb downstream 2423 true Chr11: 34614457-34616879 Glycine max
Glyma.11G256400 0.5kb downstream 0.5kb downstream 500 false Chr11: 34614457-34614956 Glycine max
Glyma.11G256400 1.0kb upstream 1.0kb upstream 2923 true Chr11: 34614957-34617879 Glycine max
Glyma.11G256400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 34616880-34617879 Glycine max
Glyma.11G256400 1.0kb downstream 1.0kb downstream 2923 true Chr11: 34613957-34616879 Glycine max
Glyma.11G256400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 34613957-34614956 Glycine max
Glyma.11G256400 2.0kb upstream 2.0kb upstream 3923 true Chr11: 34614957-34618879 Glycine max
Glyma.11G256400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 34616880-34618879 Glycine max
Glyma.11G256400 2.0kb downstream 2.0kb downstream 3923 true Chr11: 34612957-34616879 Glycine max
Glyma.11G256400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 34612957-34614956 Glycine max
Glyma.11G256400 5.0kb upstream 5.0kb upstream 6923 true Chr11: 34614957-34621879 Glycine max
Glyma.11G256400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 34616880-34621879 Glycine max
Glyma.11G256400 5.0kb downstream 5.0kb downstream 6923 true Chr11: 34609957-34616879 Glycine max
Glyma.11G256400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 34609957-34614956 Glycine max
Glyma.11G256400 10.0kb upstream 10.0kb upstream 11923 true Chr11: 34614957-34626879 Glycine max
Glyma.11G256400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 34616880-34626879 Glycine max
Glyma.11G256400 10.0kb downstream 10.0kb downstream 11923 true Chr11: 34604957-34616879 Glycine max
Glyma.11G256400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 34604957-34614956 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791897 5273 Angiosperm View MSA
122301040 5265 Fabidae View MSA
124070779 5270 Rosid View MSA
123742301 5271 Pentapetalae View MSA
122795137 5272 Eudicot View MSA
121063168 5274 Embryophyte View MSA
123102943 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.008     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed

0 Strain