Gene : Glyma.11G247600 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10836:SF59 - GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE GAPC1, CYTOSOLIC Genomic Order:  2476
Name:  ? Glyma.11G247600 Secondary Identifier:  ? PAC:30531634
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Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax ANAEROFRUCAT-PWY Glycine max pathologic  
Gmax ANAGLYCOLYSIS-PWY Glycine max pathologic  
Gmax GLUCONEO-PWY Glycine max pathologic  
Gmax PWY-1042 Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax SUCSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G247600 0.5kb upstream 0.5kb upstream 3272 true Chr11: 34032068-34035339 Glycine max
Glyma.11G247600 0.5kb upstream 0.5kb upstream 500 false Chr11: 34032068-34032567 Glycine max
Glyma.11G247600 0.5kb downstream 0.5kb downstream 3272 true Chr11: 34032568-34035839 Glycine max
Glyma.11G247600 0.5kb downstream 0.5kb downstream 500 false Chr11: 34035340-34035839 Glycine max
Glyma.11G247600 1.0kb upstream 1.0kb upstream 3772 true Chr11: 34031568-34035339 Glycine max
Glyma.11G247600 1.0kb upstream 1.0kb upstream 1000 false Chr11: 34031568-34032567 Glycine max
Glyma.11G247600 1.0kb downstream 1.0kb downstream 3772 true Chr11: 34032568-34036339 Glycine max
Glyma.11G247600 1.0kb downstream 1.0kb downstream 1000 false Chr11: 34035340-34036339 Glycine max
Glyma.11G247600 2.0kb upstream 2.0kb upstream 4772 true Chr11: 34030568-34035339 Glycine max
Glyma.11G247600 2.0kb upstream 2.0kb upstream 2000 false Chr11: 34030568-34032567 Glycine max
Glyma.11G247600 2.0kb downstream 2.0kb downstream 4772 true Chr11: 34032568-34037339 Glycine max
Glyma.11G247600 2.0kb downstream 2.0kb downstream 2000 false Chr11: 34035340-34037339 Glycine max
Glyma.11G247600 5.0kb upstream 5.0kb upstream 7772 true Chr11: 34027568-34035339 Glycine max
Glyma.11G247600 5.0kb upstream 5.0kb upstream 5000 false Chr11: 34027568-34032567 Glycine max
Glyma.11G247600 5.0kb downstream 5.0kb downstream 7772 true Chr11: 34032568-34040339 Glycine max
Glyma.11G247600 5.0kb downstream 5.0kb downstream 5000 false Chr11: 34035340-34040339 Glycine max
Glyma.11G247600 10.0kb upstream 10.0kb upstream 12772 true Chr11: 34022568-34035339 Glycine max
Glyma.11G247600 10.0kb upstream 10.0kb upstream 10000 false Chr11: 34022568-34032567 Glycine max
Glyma.11G247600 10.0kb downstream 10.0kb downstream 12772 true Chr11: 34032568-34045339 Glycine max
Glyma.11G247600 10.0kb downstream 10.0kb downstream 10000 false Chr11: 34035340-34045339 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314378 5265 Fabidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.92351 0.0 27.0929   Low
cufflinks 7.86169 0.0 21.8744   Low
cufflinks 7.21563 0.0 20.2217   Low
cufflinks 43.6003 0.0 120.451 High  
cufflinks 173.111 0.0 596.416 High High
cufflinks 254.984 0.0 974.611 High High
cufflinks 72.4119 0.0 212.1 High  
cufflinks 35.6871 0.0 97.1675 High  
cufflinks 157.504 0.0 531.506 High  
cufflinks 7.399        
cufflinks 327.323     High High
cufflinks 7.064        
cufflinks 247.35     High  
cufflinks 320.002     High High
cufflinks 146.405     High  
cufflinks 1.964       Low
cufflinks 119.692     High  
cufflinks 8.818     High  
cufflinks 7.528     High  
cufflinks 1.494       Low
cufflinks 543.202     High High
cufflinks 1.74       Low
cufflinks 2.189       Low
cufflinks 213.438     High  
cufflinks 1.359       Low
cufflinks 403.575     High High

0 Strain