Gene : Glyma.11G241400 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR22808 - NCL1 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING Genomic Order:  2414
Name:  ? Glyma.11G241400 Secondary Identifier:  ? PAC:30527737
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6829 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.11G241400 0.5kb upstream 0.5kb upstream 7332 true Chr11: 33556332-33563663 Glycine max
Glyma.11G241400 0.5kb upstream 0.5kb upstream 500 false Chr11: 33563164-33563663 Glycine max
Glyma.11G241400 0.5kb downstream 0.5kb downstream 7332 true Chr11: 33555832-33563163 Glycine max
Glyma.11G241400 0.5kb downstream 0.5kb downstream 500 false Chr11: 33555832-33556331 Glycine max
Glyma.11G241400 1.0kb upstream 1.0kb upstream 7832 true Chr11: 33556332-33564163 Glycine max
Glyma.11G241400 1.0kb upstream 1.0kb upstream 1000 false Chr11: 33563164-33564163 Glycine max
Glyma.11G241400 1.0kb downstream 1.0kb downstream 7832 true Chr11: 33555332-33563163 Glycine max
Glyma.11G241400 1.0kb downstream 1.0kb downstream 1000 false Chr11: 33555332-33556331 Glycine max
Glyma.11G241400 2.0kb upstream 2.0kb upstream 8832 true Chr11: 33556332-33565163 Glycine max
Glyma.11G241400 2.0kb upstream 2.0kb upstream 2000 false Chr11: 33563164-33565163 Glycine max
Glyma.11G241400 2.0kb downstream 2.0kb downstream 8832 true Chr11: 33554332-33563163 Glycine max
Glyma.11G241400 2.0kb downstream 2.0kb downstream 2000 false Chr11: 33554332-33556331 Glycine max
Glyma.11G241400 5.0kb upstream 5.0kb upstream 11832 true Chr11: 33556332-33568163 Glycine max
Glyma.11G241400 5.0kb upstream 5.0kb upstream 5000 false Chr11: 33563164-33568163 Glycine max
Glyma.11G241400 5.0kb downstream 5.0kb downstream 11832 true Chr11: 33551332-33563163 Glycine max
Glyma.11G241400 5.0kb downstream 5.0kb downstream 5000 false Chr11: 33551332-33556331 Glycine max
Glyma.11G241400 10.0kb upstream 10.0kb upstream 16832 true Chr11: 33556332-33573163 Glycine max
Glyma.11G241400 10.0kb upstream 10.0kb upstream 10000 false Chr11: 33563164-33573163 Glycine max
Glyma.11G241400 10.0kb downstream 10.0kb downstream 16832 true Chr11: 33546332-33563163 Glycine max
Glyma.11G241400 10.0kb downstream 10.0kb downstream 10000 false Chr11: 33546332-33556331 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296254 5265 Fabidae View MSA
124035578 5270 Rosid View MSA
123742505 5271 Pentapetalae View MSA
122793605 5272 Eudicot View MSA
122043899 5273 Angiosperm View MSA
121349940 5274 Embryophyte View MSA
123426394 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.08662 0.0 21.6312    
cufflinks 8.22912 0.0 22.0027    
cufflinks 5.25785 0.0 14.3048   Low
cufflinks 6.62575 0.0 17.8277    
cufflinks 8.53149 0.0 22.7999    
cufflinks 8.03031 0.0 21.4827    
cufflinks 10.3712 0.0 27.6691   High
cufflinks 6.68348 0.0 17.9806    
cufflinks 7.92879 0.0 21.2189    
cufflinks 3.285        
cufflinks 0.954       Low
cufflinks 3.877        
cufflinks 5.364        
cufflinks 6.038       High
cufflinks 2.589        
cufflinks 4.394        
cufflinks 2.042        
cufflinks 4.34        
cufflinks 4.814        
cufflinks 4.877        
cufflinks 1.226       Low
cufflinks 4.768        
cufflinks 4.209        
cufflinks 1.249       Low
cufflinks 4.458        
cufflinks 2.131        

0 Strain