Gene : Glyma.12G014200 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR10108:SF708 - TOCOPHEROL O-METHYLTRANSFERASE, CHLOROPLASTIC Genomic Order:  142
Name:  ? Glyma.12G014200 Secondary Identifier:  ? PAC:30545871
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1422 Glycine max pathologic  
Gmax PWY-7436 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G014200 0.5kb upstream 0.5kb upstream 4012 true Chr12: 1025584-1029595 Glycine max
Glyma.12G014200 0.5kb upstream 0.5kb upstream 500 false Chr12: 1029096-1029595 Glycine max
Glyma.12G014200 0.5kb downstream 0.5kb downstream 4012 true Chr12: 1025084-1029095 Glycine max
Glyma.12G014200 0.5kb downstream 0.5kb downstream 500 false Chr12: 1025084-1025583 Glycine max
Glyma.12G014200 1.0kb upstream 1.0kb upstream 4512 true Chr12: 1025584-1030095 Glycine max
Glyma.12G014200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1029096-1030095 Glycine max
Glyma.12G014200 1.0kb downstream 1.0kb downstream 4512 true Chr12: 1024584-1029095 Glycine max
Glyma.12G014200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1024584-1025583 Glycine max
Glyma.12G014200 2.0kb upstream 2.0kb upstream 5512 true Chr12: 1025584-1031095 Glycine max
Glyma.12G014200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1029096-1031095 Glycine max
Glyma.12G014200 2.0kb downstream 2.0kb downstream 5512 true Chr12: 1023584-1029095 Glycine max
Glyma.12G014200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1023584-1025583 Glycine max
Glyma.12G014200 5.0kb upstream 5.0kb upstream 8512 true Chr12: 1025584-1034095 Glycine max
Glyma.12G014200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1029096-1034095 Glycine max
Glyma.12G014200 5.0kb downstream 5.0kb downstream 8512 true Chr12: 1020584-1029095 Glycine max
Glyma.12G014200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1020584-1025583 Glycine max
Glyma.12G014200 10.0kb upstream 10.0kb upstream 13512 true Chr12: 1025584-1039095 Glycine max
Glyma.12G014200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1029096-1039095 Glycine max
Glyma.12G014200 10.0kb downstream 10.0kb downstream 13512 true Chr12: 1015584-1029095 Glycine max
Glyma.12G014200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1015584-1025583 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299089 5265 Fabidae View MSA
124067151 5270 Rosid View MSA
123747323 5271 Pentapetalae View MSA
122786433 5272 Eudicot View MSA
122044817 5273 Angiosperm View MSA
121347406 5274 Embryophyte View MSA
123427925 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 26.6093 0.0 99.5264 High High
cufflinks 1.85315 0.0 11.2368   Low
cufflinks 10.5701 0.0 33.479    
cufflinks 8.45452 0.0 39.0034    
cufflinks 7.82583 0.0 26.3886    
cufflinks 3.8401 0.0 12.2354    
cufflinks 2.3714 0.0 8.61882    
cufflinks 3.55017 0.0 11.6701    
cufflinks 2.52918 0.0 9.19701    
cufflinks 1.921        
cufflinks 0.037     Low Low
cufflinks 4.547       High
cufflinks 2.484        
cufflinks 3.975       High
cufflinks 0.018     Low Low
cufflinks 0.306        
cufflinks 0.258        
cufflinks 13.533     High High
cufflinks 0.238        
cufflinks 0.453        
cufflinks 0.091        
cufflinks 0.412        
cufflinks 0.256        
cufflinks 0.022     Low Low
cufflinks 0.432        
cufflinks 0.355        

0 Strain