Gene : Glyma.12G018100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31636:SF65 - SCARECROW-LIKE PROTEIN 4-RELATED Genomic Order:  181
Name:  ? Glyma.12G018100 Secondary Identifier:  ? PAC:30549071
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G018100 0.5kb upstream 0.5kb upstream 2546 true Chr12: 1264571-1267116 Glycine max
Glyma.12G018100 0.5kb upstream 0.5kb upstream 500 false Chr12: 1264571-1265070 Glycine max
Glyma.12G018100 0.5kb downstream 0.5kb downstream 2546 true Chr12: 1265071-1267616 Glycine max
Glyma.12G018100 0.5kb downstream 0.5kb downstream 500 false Chr12: 1267117-1267616 Glycine max
Glyma.12G018100 1.0kb upstream 1.0kb upstream 3046 true Chr12: 1264071-1267116 Glycine max
Glyma.12G018100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 1264071-1265070 Glycine max
Glyma.12G018100 1.0kb downstream 1.0kb downstream 3046 true Chr12: 1265071-1268116 Glycine max
Glyma.12G018100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 1267117-1268116 Glycine max
Glyma.12G018100 2.0kb upstream 2.0kb upstream 4046 true Chr12: 1263071-1267116 Glycine max
Glyma.12G018100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 1263071-1265070 Glycine max
Glyma.12G018100 2.0kb downstream 2.0kb downstream 4046 true Chr12: 1265071-1269116 Glycine max
Glyma.12G018100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 1267117-1269116 Glycine max
Glyma.12G018100 5.0kb upstream 5.0kb upstream 7046 true Chr12: 1260071-1267116 Glycine max
Glyma.12G018100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 1260071-1265070 Glycine max
Glyma.12G018100 5.0kb downstream 5.0kb downstream 7046 true Chr12: 1265071-1272116 Glycine max
Glyma.12G018100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 1267117-1272116 Glycine max
Glyma.12G018100 10.0kb upstream 10.0kb upstream 12046 true Chr12: 1255071-1267116 Glycine max
Glyma.12G018100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 1255071-1265070 Glycine max
Glyma.12G018100 10.0kb downstream 10.0kb downstream 12046 true Chr12: 1265071-1277116 Glycine max
Glyma.12G018100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 1267117-1277116 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302637 5265 Fabidae View MSA
124066285 5270 Rosid View MSA
123739622 5271 Pentapetalae View MSA
122786764 5272 Eudicot View MSA
122043818 5273 Angiosperm View MSA
121346051 5274 Embryophyte View MSA
123380313 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3574 0.0 33.1634    
cufflinks 8.92712 0.0 24.4003    
cufflinks 12.6871 0.0 34.1007    
cufflinks 7.58256 0.0 20.9895    
cufflinks 11.4235 0.0 30.6876    
cufflinks 9.51901 0.0 25.8253    
cufflinks 2.87963 0.0 8.93553   Low
cufflinks 19.4615 0.0 51.954   High
cufflinks 11.0463 0.0 29.7633    
cufflinks 2.825       Low
cufflinks 25.121     High High
cufflinks 8.704     High  
cufflinks 2.645       Low
cufflinks 3.85        
cufflinks 13.139     High  
cufflinks 7.527     High  
cufflinks 1.031       Low
cufflinks 5.375        
cufflinks 5.424        
cufflinks 6.914     High  
cufflinks 34.247     High High
cufflinks 7.022        
cufflinks 4.04        
cufflinks 24.944     High High
cufflinks 6.53        
cufflinks 12.186     High  

0 Strain