Gene : Glyma.12G045900 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31566:SF0 - CYTOCHROME C BIOGENESIS PROTEIN CCS1, CHLOROPLASTIC Genomic Order:  459
Name:  ? Glyma.12G045900 Secondary Identifier:  ? PAC:30545684
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G045900 0.5kb upstream 0.5kb upstream 4797 true Chr12: 3336701-3341497 Glycine max
Glyma.12G045900 0.5kb upstream 0.5kb upstream 500 false Chr12: 3336701-3337200 Glycine max
Glyma.12G045900 0.5kb downstream 0.5kb downstream 4797 true Chr12: 3337201-3341997 Glycine max
Glyma.12G045900 0.5kb downstream 0.5kb downstream 500 false Chr12: 3341498-3341997 Glycine max
Glyma.12G045900 1.0kb upstream 1.0kb upstream 5297 true Chr12: 3336201-3341497 Glycine max
Glyma.12G045900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3336201-3337200 Glycine max
Glyma.12G045900 1.0kb downstream 1.0kb downstream 5297 true Chr12: 3337201-3342497 Glycine max
Glyma.12G045900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3341498-3342497 Glycine max
Glyma.12G045900 2.0kb upstream 2.0kb upstream 6297 true Chr12: 3335201-3341497 Glycine max
Glyma.12G045900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3335201-3337200 Glycine max
Glyma.12G045900 2.0kb downstream 2.0kb downstream 6297 true Chr12: 3337201-3343497 Glycine max
Glyma.12G045900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3341498-3343497 Glycine max
Glyma.12G045900 5.0kb upstream 5.0kb upstream 9297 true Chr12: 3332201-3341497 Glycine max
Glyma.12G045900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3332201-3337200 Glycine max
Glyma.12G045900 5.0kb downstream 5.0kb downstream 9297 true Chr12: 3337201-3346497 Glycine max
Glyma.12G045900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3341498-3346497 Glycine max
Glyma.12G045900 10.0kb upstream 10.0kb upstream 14297 true Chr12: 3327201-3341497 Glycine max
Glyma.12G045900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3327201-3337200 Glycine max
Glyma.12G045900 10.0kb downstream 10.0kb downstream 14297 true Chr12: 3337201-3351497 Glycine max
Glyma.12G045900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3341498-3351497 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300920 5265 Fabidae View MSA
124068876 5270 Rosid View MSA
123740681 5271 Pentapetalae View MSA
122796764 5272 Eudicot View MSA
122043580 5273 Angiosperm View MSA
121347633 5274 Embryophyte View MSA
123425145 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.43674 0.0 5.03966   High
cufflinks 1.06728 0.0 3.82843   High
cufflinks 0.54757 0.0 2.03763    
cufflinks 0.456489 0.0 1.71534    
cufflinks 0.150384 0.0 0.592488 Low  
cufflinks 0.089127 0.0 0.357796 Low Low
cufflinks 0.39014 0.0 1.47673    
cufflinks 0.718214 0.0 2.63801    
cufflinks 0.11066 0.0 0.440492 Low Low
cufflinks 0.373        
cufflinks 0.08        
cufflinks 1.077        
cufflinks 0.036     Low Low
cufflinks 0.108        
cufflinks 0.174        
cufflinks 3.487       High
cufflinks 0.021     Low Low
cufflinks 1.376        
cufflinks 1.21        
cufflinks 5.987       High
cufflinks 0.121        
cufflinks 4.885       High
cufflinks 4.167       High
cufflinks 0.089        
cufflinks 4.289       High
cufflinks 0.035     Low Low

0 Strain