Gene : Glyma.12G046600 G. max Wm82.a2.v1
Defline:  (1 of 330) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2) Genomic Order:  466
Name:  ? Glyma.12G046600 Secondary Identifier:  ? PAC:30546115
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G046600 0.5kb upstream 0.5kb upstream 2582 true Chr12: 3387287-3389868 Glycine max
Glyma.12G046600 0.5kb upstream 0.5kb upstream 500 false Chr12: 3389369-3389868 Glycine max
Glyma.12G046600 0.5kb downstream 0.5kb downstream 2582 true Chr12: 3386787-3389368 Glycine max
Glyma.12G046600 0.5kb downstream 0.5kb downstream 500 false Chr12: 3386787-3387286 Glycine max
Glyma.12G046600 1.0kb upstream 1.0kb upstream 3082 true Chr12: 3387287-3390368 Glycine max
Glyma.12G046600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3389369-3390368 Glycine max
Glyma.12G046600 1.0kb downstream 1.0kb downstream 3082 true Chr12: 3386287-3389368 Glycine max
Glyma.12G046600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3386287-3387286 Glycine max
Glyma.12G046600 2.0kb upstream 2.0kb upstream 4082 true Chr12: 3387287-3391368 Glycine max
Glyma.12G046600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3389369-3391368 Glycine max
Glyma.12G046600 2.0kb downstream 2.0kb downstream 4082 true Chr12: 3385287-3389368 Glycine max
Glyma.12G046600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3385287-3387286 Glycine max
Glyma.12G046600 5.0kb upstream 5.0kb upstream 7082 true Chr12: 3387287-3394368 Glycine max
Glyma.12G046600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3389369-3394368 Glycine max
Glyma.12G046600 5.0kb downstream 5.0kb downstream 7082 true Chr12: 3382287-3389368 Glycine max
Glyma.12G046600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3382287-3387286 Glycine max
Glyma.12G046600 10.0kb upstream 10.0kb upstream 12082 true Chr12: 3387287-3399368 Glycine max
Glyma.12G046600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3389369-3399368 Glycine max
Glyma.12G046600 10.0kb downstream 10.0kb downstream 12082 true Chr12: 3377287-3389368 Glycine max
Glyma.12G046600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3377287-3387286 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244841 5265 Fabidae Singleton cluster - no MSA
124063386 5270 Rosid View MSA
123751448 5271 Pentapetalae View MSA
122786309 5272 Eudicot View MSA
122045873 5273 Angiosperm View MSA
121310522 5274 Embryophyte View MSA
123347983 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0258598 0.0 0.110201 Low  
cufflinks 0.061959 0.0 0.250174 Low High
cufflinks 0.0463374 0.0 0.189254 Low  
cufflinks 0.0414464 0.0 0.170685 Low  
cufflinks 0.0222475 0.0 0.096063 Low Low
cufflinks 0.0239254 0.0 0.102533 Low  
cufflinks 0.0458321 0.0 0.188006 Low  
cufflinks 0.0251991 0.0 0.107454 Low  
cufflinks 0.0254451 0.0 0.108443 Low  
cufflinks 0.048     Low  
cufflinks 0.035     Low  
cufflinks 0.158        
cufflinks 0.184       High
cufflinks 0.205       High
cufflinks 0.019     Low Low
cufflinks 0.108        
cufflinks 0.007     Low Low
cufflinks 0.14        
cufflinks 0.14        
cufflinks 0.062     Low  
cufflinks 0.04     Low  
cufflinks 0.117        
cufflinks 0.145        
cufflinks 0.027     Low  
cufflinks 0.085     Low  
cufflinks 0.032     Low  

0 Strain