Gene : Glyma.12G050100 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR32002:SF7 - PROTEIN NLP8-RELATED Genomic Order:  501
Name:  ? Glyma.12G050100 Secondary Identifier:  ? PAC:30545998
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G050100 0.5kb upstream 0.5kb upstream 6701 true Chr12: 3589380-3596080 Glycine max
Glyma.12G050100 0.5kb upstream 0.5kb upstream 500 false Chr12: 3595581-3596080 Glycine max
Glyma.12G050100 0.5kb downstream 0.5kb downstream 6701 true Chr12: 3588880-3595580 Glycine max
Glyma.12G050100 0.5kb downstream 0.5kb downstream 500 false Chr12: 3588880-3589379 Glycine max
Glyma.12G050100 1.0kb upstream 1.0kb upstream 7201 true Chr12: 3589380-3596580 Glycine max
Glyma.12G050100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3595581-3596580 Glycine max
Glyma.12G050100 1.0kb downstream 1.0kb downstream 7201 true Chr12: 3588380-3595580 Glycine max
Glyma.12G050100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3588380-3589379 Glycine max
Glyma.12G050100 2.0kb upstream 2.0kb upstream 8201 true Chr12: 3589380-3597580 Glycine max
Glyma.12G050100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3595581-3597580 Glycine max
Glyma.12G050100 2.0kb downstream 2.0kb downstream 8201 true Chr12: 3587380-3595580 Glycine max
Glyma.12G050100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3587380-3589379 Glycine max
Glyma.12G050100 5.0kb upstream 5.0kb upstream 11201 true Chr12: 3589380-3600580 Glycine max
Glyma.12G050100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3595581-3600580 Glycine max
Glyma.12G050100 5.0kb downstream 5.0kb downstream 11201 true Chr12: 3584380-3595580 Glycine max
Glyma.12G050100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3584380-3589379 Glycine max
Glyma.12G050100 10.0kb upstream 10.0kb upstream 16201 true Chr12: 3589380-3605580 Glycine max
Glyma.12G050100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3595581-3605580 Glycine max
Glyma.12G050100 10.0kb downstream 10.0kb downstream 16201 true Chr12: 3579380-3595580 Glycine max
Glyma.12G050100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3579380-3589379 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122296638 5265 Fabidae View MSA
124065318 5270 Rosid View MSA
123743486 5271 Pentapetalae View MSA
122791443 5272 Eudicot View MSA
122047397 5273 Angiosperm View MSA
121350940 5274 Embryophyte View MSA
123428170 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.634784 0.0 4.40234    
cufflinks 0.122283 0.0 0.587642 Low  
cufflinks 0.0350442 0.0 0.280745 Low Low
cufflinks 0.0342113 0.0 0.137538 Low Low
cufflinks 1.48012 0.0 7.76036    
cufflinks 1.20577 0.0 5.35479    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.699326 0.0 2.74113    
cufflinks 7.59176 0.0 27.9283   High
cufflinks 0.059     Low  
cufflinks 0.013     Low  
cufflinks 0.013     Low  
cufflinks 0.029     Low  
cufflinks 0.007     Low Low
cufflinks 2.401       High
cufflinks 0.038     Low  
cufflinks 0.416       High
cufflinks 0.011     Low Low
cufflinks 0.046     Low  
cufflinks 0.057     Low  
cufflinks 0.018     Low  
cufflinks 0.047     Low  
cufflinks 0.108        
cufflinks 0.02     Low  
cufflinks 0.047     Low  
cufflinks 0.163        

0 Strain