Gene : Glyma.12G040200 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR10894:SF1 - PROTEIN NOL-5 Genomic Order:  402
Name:  ? Glyma.12G040200 Secondary Identifier:  ? PAC:30545424
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G040200 0.5kb upstream 0.5kb upstream 5462 true Chr12: 2893314-2898775 Glycine max
Glyma.12G040200 0.5kb upstream 0.5kb upstream 500 false Chr12: 2898276-2898775 Glycine max
Glyma.12G040200 0.5kb downstream 0.5kb downstream 5462 true Chr12: 2892814-2898275 Glycine max
Glyma.12G040200 0.5kb downstream 0.5kb downstream 500 false Chr12: 2892814-2893313 Glycine max
Glyma.12G040200 1.0kb upstream 1.0kb upstream 5962 true Chr12: 2893314-2899275 Glycine max
Glyma.12G040200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 2898276-2899275 Glycine max
Glyma.12G040200 1.0kb downstream 1.0kb downstream 5962 true Chr12: 2892314-2898275 Glycine max
Glyma.12G040200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 2892314-2893313 Glycine max
Glyma.12G040200 2.0kb upstream 2.0kb upstream 6962 true Chr12: 2893314-2900275 Glycine max
Glyma.12G040200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 2898276-2900275 Glycine max
Glyma.12G040200 2.0kb downstream 2.0kb downstream 6962 true Chr12: 2891314-2898275 Glycine max
Glyma.12G040200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 2891314-2893313 Glycine max
Glyma.12G040200 5.0kb upstream 5.0kb upstream 9962 true Chr12: 2893314-2903275 Glycine max
Glyma.12G040200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 2898276-2903275 Glycine max
Glyma.12G040200 5.0kb downstream 5.0kb downstream 9962 true Chr12: 2888314-2898275 Glycine max
Glyma.12G040200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 2888314-2893313 Glycine max
Glyma.12G040200 10.0kb upstream 10.0kb upstream 14962 true Chr12: 2893314-2908275 Glycine max
Glyma.12G040200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 2898276-2908275 Glycine max
Glyma.12G040200 10.0kb downstream 10.0kb downstream 14962 true Chr12: 2883314-2898275 Glycine max
Glyma.12G040200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 2883314-2893313 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041003 5273 Angiosperm View MSA
122299942 5265 Fabidae View MSA
124068125 5270 Rosid View MSA
123744603 5271 Pentapetalae View MSA
122786975 5272 Eudicot View MSA
121345420 5274 Embryophyte View MSA
123426153 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.0168 0.0 127.673 High  
cufflinks 30.3516 0.0 99.5198 High  
cufflinks 13.4428 0.0 46.6939   Low
cufflinks 20.8307 0.0 77.0677 High  
cufflinks 49.3897 0.0 214.61 High High
cufflinks 32.1463 0.0 123.405 High  
cufflinks 30.7003 0.0 100.507 High  
cufflinks 27.326 0.0 102.581 High  
cufflinks 30.1554 0.0 114.788 High  
cufflinks 4.573        
cufflinks 1.362       Low
cufflinks 5.041        
cufflinks 15.86     High High
cufflinks 21.531     High High
cufflinks 1.72       Low
cufflinks 3.318        
cufflinks 3.828        
cufflinks 4.862        
cufflinks 7.471     High  
cufflinks 2.227        
cufflinks 2.158        
cufflinks 2.449        
cufflinks 4.923        
cufflinks 1.586       Low
cufflinks 2.966        
cufflinks 3.274        

0 Strain