Gene : Glyma.12G053500 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR11685:SF135 - E3 UBIQUITIN-PROTEIN LIGASE ARI10-RELATED Genomic Order:  535
Name:  ? Glyma.12G053500 Secondary Identifier:  ? PAC:30546975
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G053500 0.5kb upstream 0.5kb upstream 8388 true Chr12: 3838105-3846492 Glycine max
Glyma.12G053500 0.5kb upstream 0.5kb upstream 500 false Chr12: 3845993-3846492 Glycine max
Glyma.12G053500 0.5kb downstream 0.5kb downstream 8388 true Chr12: 3837605-3845992 Glycine max
Glyma.12G053500 0.5kb downstream 0.5kb downstream 500 false Chr12: 3837605-3838104 Glycine max
Glyma.12G053500 1.0kb upstream 1.0kb upstream 8888 true Chr12: 3838105-3846992 Glycine max
Glyma.12G053500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 3845993-3846992 Glycine max
Glyma.12G053500 1.0kb downstream 1.0kb downstream 8888 true Chr12: 3837105-3845992 Glycine max
Glyma.12G053500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 3837105-3838104 Glycine max
Glyma.12G053500 2.0kb upstream 2.0kb upstream 9888 true Chr12: 3838105-3847992 Glycine max
Glyma.12G053500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 3845993-3847992 Glycine max
Glyma.12G053500 2.0kb downstream 2.0kb downstream 9888 true Chr12: 3836105-3845992 Glycine max
Glyma.12G053500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 3836105-3838104 Glycine max
Glyma.12G053500 5.0kb upstream 5.0kb upstream 12888 true Chr12: 3838105-3850992 Glycine max
Glyma.12G053500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 3845993-3850992 Glycine max
Glyma.12G053500 5.0kb downstream 5.0kb downstream 12888 true Chr12: 3833105-3845992 Glycine max
Glyma.12G053500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 3833105-3838104 Glycine max
Glyma.12G053500 10.0kb upstream 10.0kb upstream 17888 true Chr12: 3838105-3855992 Glycine max
Glyma.12G053500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 3845993-3855992 Glycine max
Glyma.12G053500 10.0kb downstream 10.0kb downstream 17888 true Chr12: 3828105-3845992 Glycine max
Glyma.12G053500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 3828105-3838104 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314915 5265 Fabidae View MSA
124071269 5270 Rosid View MSA
123742457 5271 Pentapetalae View MSA
122787924 5272 Eudicot View MSA
122045508 5273 Angiosperm View MSA
121343931 5274 Embryophyte View MSA
123428000 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 21.4532 0.0 76.696    
cufflinks 11.3538 0.0 39.1273   Low
cufflinks 31.4104 0.0 120.795 High High
cufflinks 16.1786 0.0 56.3186    
cufflinks 13.8984 0.0 47.9169    
cufflinks 23.0073 0.0 83.4326 High  
cufflinks 12.7014 0.0 43.8069    
cufflinks 19.8595 0.0 70.4326    
cufflinks 14.5822 0.0 50.4062    
cufflinks 3.609        
cufflinks 3.589        
cufflinks 3.851       High
cufflinks 2.775        
cufflinks 2.004       Low
cufflinks 2.838        
cufflinks 2.516        
cufflinks 3.059        
cufflinks 2.97        
cufflinks 2.727        
cufflinks 2.615        
cufflinks 3.588        
cufflinks 2.635        
cufflinks 2.357       Low
cufflinks 4.142       High
cufflinks 2.32       Low
cufflinks 4.107       High

0 Strain