Gene : Glyma.12G107000 G. max Wm82.a2.v1
Defline:  (1 of 2) PF00036//PF00070 - EF hand (EF-hand_1) // Pyridine nucleotide-disulphide oxidoreductase (Pyr_redox) Genomic Order:  1070
Name:  ? Glyma.12G107000 Secondary Identifier:  ? PAC:30547643
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7279 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G107000 0.5kb upstream 0.5kb upstream 5795 true Chr12: 9804141-9809935 Glycine max
Glyma.12G107000 0.5kb upstream 0.5kb upstream 500 false Chr12: 9809436-9809935 Glycine max
Glyma.12G107000 0.5kb downstream 0.5kb downstream 5795 true Chr12: 9803641-9809435 Glycine max
Glyma.12G107000 0.5kb downstream 0.5kb downstream 500 false Chr12: 9803641-9804140 Glycine max
Glyma.12G107000 1.0kb upstream 1.0kb upstream 6295 true Chr12: 9804141-9810435 Glycine max
Glyma.12G107000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 9809436-9810435 Glycine max
Glyma.12G107000 1.0kb downstream 1.0kb downstream 6295 true Chr12: 9803141-9809435 Glycine max
Glyma.12G107000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 9803141-9804140 Glycine max
Glyma.12G107000 2.0kb upstream 2.0kb upstream 7295 true Chr12: 9804141-9811435 Glycine max
Glyma.12G107000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 9809436-9811435 Glycine max
Glyma.12G107000 2.0kb downstream 2.0kb downstream 7295 true Chr12: 9802141-9809435 Glycine max
Glyma.12G107000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 9802141-9804140 Glycine max
Glyma.12G107000 5.0kb upstream 5.0kb upstream 10295 true Chr12: 9804141-9814435 Glycine max
Glyma.12G107000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 9809436-9814435 Glycine max
Glyma.12G107000 5.0kb downstream 5.0kb downstream 10295 true Chr12: 9799141-9809435 Glycine max
Glyma.12G107000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 9799141-9804140 Glycine max
Glyma.12G107000 10.0kb upstream 10.0kb upstream 15295 true Chr12: 9804141-9819435 Glycine max
Glyma.12G107000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 9809436-9819435 Glycine max
Glyma.12G107000 10.0kb downstream 10.0kb downstream 15295 true Chr12: 9794141-9809435 Glycine max
Glyma.12G107000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 9794141-9804140 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306603 5265 Fabidae View MSA
124065311 5270 Rosid View MSA
123739176 5271 Pentapetalae View MSA
122786573 5272 Eudicot View MSA
122046891 5273 Angiosperm View MSA
121348097 5274 Embryophyte View MSA
123427504 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3312 0.0 32.9365    
cufflinks 12.9311 0.0 34.5165    
cufflinks 11.9171 0.0 31.8264    
cufflinks 19.7517 0.0 53.0024    
cufflinks 18.4398 0.0 49.3398    
cufflinks 23.0585 0.0 62.26 High High
cufflinks 7.46458 0.0 20.3661   Low
cufflinks 20.1902 0.0 54.2139    
cufflinks 9.36126 0.0 25.2045   Low
cufflinks 13.601     High High
cufflinks 1.972       Low
cufflinks 7.428     High  
cufflinks 11.328     High  
cufflinks 11.276     High  
cufflinks 0.603       Low
cufflinks 9.185     High  
cufflinks 4.608        
cufflinks 9.277     High  
cufflinks 8.215     High  
cufflinks 9.549     High  
cufflinks 2.888        
cufflinks 8.379     High  
cufflinks 6.562        
cufflinks 2.169       Low
cufflinks 8.943     High  
cufflinks 5.158        

0 Strain