Gene : Glyma.12G082100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21266:SF24 - PHEOPHORBIDE A OXYGENASE, CHLOROPLASTIC Genomic Order:  821
Name:  ? Glyma.12G082100 Secondary Identifier:  ? PAC:30548653
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-5098 Glycine max pathologic  
Gmax PWY-6927 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G082100 0.5kb upstream 0.5kb upstream 5807 true Chr12: 6503492-6509298 Glycine max
Glyma.12G082100 0.5kb upstream 0.5kb upstream 500 false Chr12: 6508799-6509298 Glycine max
Glyma.12G082100 0.5kb downstream 0.5kb downstream 5807 true Chr12: 6502992-6508798 Glycine max
Glyma.12G082100 0.5kb downstream 0.5kb downstream 500 false Chr12: 6502992-6503491 Glycine max
Glyma.12G082100 1.0kb upstream 1.0kb upstream 6307 true Chr12: 6503492-6509798 Glycine max
Glyma.12G082100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 6508799-6509798 Glycine max
Glyma.12G082100 1.0kb downstream 1.0kb downstream 6307 true Chr12: 6502492-6508798 Glycine max
Glyma.12G082100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 6502492-6503491 Glycine max
Glyma.12G082100 2.0kb upstream 2.0kb upstream 7307 true Chr12: 6503492-6510798 Glycine max
Glyma.12G082100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 6508799-6510798 Glycine max
Glyma.12G082100 2.0kb downstream 2.0kb downstream 7307 true Chr12: 6501492-6508798 Glycine max
Glyma.12G082100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 6501492-6503491 Glycine max
Glyma.12G082100 5.0kb upstream 5.0kb upstream 10307 true Chr12: 6503492-6513798 Glycine max
Glyma.12G082100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 6508799-6513798 Glycine max
Glyma.12G082100 5.0kb downstream 5.0kb downstream 10307 true Chr12: 6498492-6508798 Glycine max
Glyma.12G082100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 6498492-6503491 Glycine max
Glyma.12G082100 10.0kb upstream 10.0kb upstream 15307 true Chr12: 6503492-6518798 Glycine max
Glyma.12G082100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 6508799-6518798 Glycine max
Glyma.12G082100 10.0kb downstream 10.0kb downstream 15307 true Chr12: 6493492-6508798 Glycine max
Glyma.12G082100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 6493492-6503491 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305275 5265 Fabidae View MSA
124063848 5270 Rosid View MSA
123748606 5271 Pentapetalae View MSA
122790785 5272 Eudicot View MSA
122042360 5273 Angiosperm View MSA
123429167 5275 Viridiplantae View MSA
121346632 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 53.4031 0.0 231.522 High High
cufflinks 12.5492 0.0 37.4493    
cufflinks 43.2207 0.0 173.674 High High
cufflinks 9.81926 0.0 35.1896    
cufflinks 4.42034 0.0 15.0152    
cufflinks 4.83789 0.0 18.591    
cufflinks 8.97441 0.0 27.3012    
cufflinks 17.6165 0.0 61.0058    
cufflinks 3.54885 0.0 14.8364   Low
cufflinks 2.939        
cufflinks 0.987        
cufflinks 8.083     High High
cufflinks 0.52       Low
cufflinks 0.438       Low
cufflinks 0.562       Low
cufflinks 2.515        
cufflinks 1.409        
cufflinks 5.362       High
cufflinks 2.981        
cufflinks 2.063        
cufflinks 2.625        
cufflinks 2.814        
cufflinks 2.78        
cufflinks 0.849        
cufflinks 2.303        
cufflinks 1.269        

0 Strain