Gene : Glyma.12G139900 G. max Wm82.a2.v1
Defline:  (1 of 2) 4.6.1.12 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase / MECDP-synthase Genomic Order:  1399
Name:  ? Glyma.12G139900 Secondary Identifier:  ? PAC:30545363
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G139900 0.5kb upstream 0.5kb upstream 1339 true Chr12: 17196229-17197567 Glycine max
Glyma.12G139900 0.5kb upstream 0.5kb upstream 500 false Chr12: 17196229-17196728 Glycine max
Glyma.12G139900 0.5kb downstream 0.5kb downstream 1339 true Chr12: 17196729-17198067 Glycine max
Glyma.12G139900 0.5kb downstream 0.5kb downstream 500 false Chr12: 17197568-17198067 Glycine max
Glyma.12G139900 1.0kb upstream 1.0kb upstream 1839 true Chr12: 17195729-17197567 Glycine max
Glyma.12G139900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 17195729-17196728 Glycine max
Glyma.12G139900 1.0kb downstream 1.0kb downstream 1839 true Chr12: 17196729-17198567 Glycine max
Glyma.12G139900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 17197568-17198567 Glycine max
Glyma.12G139900 2.0kb upstream 2.0kb upstream 2839 true Chr12: 17194729-17197567 Glycine max
Glyma.12G139900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 17194729-17196728 Glycine max
Glyma.12G139900 2.0kb downstream 2.0kb downstream 2839 true Chr12: 17196729-17199567 Glycine max
Glyma.12G139900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 17197568-17199567 Glycine max
Glyma.12G139900 5.0kb upstream 5.0kb upstream 5839 true Chr12: 17191729-17197567 Glycine max
Glyma.12G139900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 17191729-17196728 Glycine max
Glyma.12G139900 5.0kb downstream 5.0kb downstream 5839 true Chr12: 17196729-17202567 Glycine max
Glyma.12G139900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 17197568-17202567 Glycine max
Glyma.12G139900 10.0kb upstream 10.0kb upstream 10839 true Chr12: 17186729-17197567 Glycine max
Glyma.12G139900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 17186729-17196728 Glycine max
Glyma.12G139900 10.0kb downstream 10.0kb downstream 10839 true Chr12: 17196729-17207567 Glycine max
Glyma.12G139900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 17197568-17207567 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305262 5265 Fabidae View MSA
124062148 5270 Rosid View MSA
123737612 5271 Pentapetalae View MSA
122786124 5272 Eudicot View MSA
122042234 5273 Angiosperm View MSA
121344039 5274 Embryophyte View MSA
123423768 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.66981 0.0 18.2979   High
cufflinks 0.31857 0.0 6.18161    
cufflinks 0.600751 0.0 7.35128    
cufflinks 0.282426 0.0 5.06709    
cufflinks 0.153542 0.0 3.23728 Low Low
cufflinks 0.339616 0.0 4.7248    
cufflinks 0.387242 0.0 5.72722    
cufflinks 0.355319 0.0 6.79154    
cufflinks 0.177813 0.0 3.3783 Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.02     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.045     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.019     Low  
cufflinks 0.021     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.093     Low High
cufflinks 0.041     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.063     Low High
cufflinks 0.02     Low  

0 Strain