Gene : Glyma.12G118300 G. max Wm82.a2.v1
Defline:  (1 of 1) PF01535//PF03140//PF13041 - PPR repeat (PPR) // Plant protein of unknown function (DUF247) // PPR repeat family (PPR_2) Genomic Order:  1183
Name:  ? Glyma.12G118300 Secondary Identifier:  ? PAC:30548284
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G118300 0.5kb upstream 0.5kb upstream 5535 true Chr12: 12196802-12202336 Glycine max
Glyma.12G118300 0.5kb upstream 0.5kb upstream 500 false Chr12: 12196802-12197301 Glycine max
Glyma.12G118300 0.5kb downstream 0.5kb downstream 5535 true Chr12: 12197302-12202836 Glycine max
Glyma.12G118300 0.5kb downstream 0.5kb downstream 500 false Chr12: 12202337-12202836 Glycine max
Glyma.12G118300 1.0kb upstream 1.0kb upstream 6035 true Chr12: 12196302-12202336 Glycine max
Glyma.12G118300 1.0kb upstream 1.0kb upstream 1000 false Chr12: 12196302-12197301 Glycine max
Glyma.12G118300 1.0kb downstream 1.0kb downstream 6035 true Chr12: 12197302-12203336 Glycine max
Glyma.12G118300 1.0kb downstream 1.0kb downstream 1000 false Chr12: 12202337-12203336 Glycine max
Glyma.12G118300 2.0kb upstream 2.0kb upstream 7035 true Chr12: 12195302-12202336 Glycine max
Glyma.12G118300 2.0kb upstream 2.0kb upstream 2000 false Chr12: 12195302-12197301 Glycine max
Glyma.12G118300 2.0kb downstream 2.0kb downstream 7035 true Chr12: 12197302-12204336 Glycine max
Glyma.12G118300 2.0kb downstream 2.0kb downstream 2000 false Chr12: 12202337-12204336 Glycine max
Glyma.12G118300 5.0kb upstream 5.0kb upstream 10035 true Chr12: 12192302-12202336 Glycine max
Glyma.12G118300 5.0kb upstream 5.0kb upstream 5000 false Chr12: 12192302-12197301 Glycine max
Glyma.12G118300 5.0kb downstream 5.0kb downstream 10035 true Chr12: 12197302-12207336 Glycine max
Glyma.12G118300 5.0kb downstream 5.0kb downstream 5000 false Chr12: 12202337-12207336 Glycine max
Glyma.12G118300 10.0kb upstream 10.0kb upstream 15035 true Chr12: 12187302-12202336 Glycine max
Glyma.12G118300 10.0kb upstream 10.0kb upstream 10000 false Chr12: 12187302-12197301 Glycine max
Glyma.12G118300 10.0kb downstream 10.0kb downstream 15035 true Chr12: 12197302-12212336 Glycine max
Glyma.12G118300 10.0kb downstream 10.0kb downstream 10000 false Chr12: 12202337-12212336 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313793 5265 Fabidae View MSA
124074430 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.204483 0.0 0.790892 Low Low
cufflinks 1.02665 0.0 3.64694   High
cufflinks 0.226678 0.0 0.870217   Low
cufflinks 0.633369 0.0 2.3213    
cufflinks 0.69843 0.0 2.55201    
cufflinks 0.504004 0.0 1.871    
cufflinks 1.00148 0.0 3.57503   High
cufflinks 0.318616 0.0 1.20754    
cufflinks 0.325531 0.0 1.23337    
cufflinks 0.216        
cufflinks 0.015     Low Low
cufflinks 0.453        
cufflinks 0.319        
cufflinks 0.425        
cufflinks 0.088        
cufflinks 0.562        
cufflinks 0.015     Low Low
cufflinks 0.93       High
cufflinks 0.479        
cufflinks 0.7        
cufflinks 0.014     Low Low
cufflinks 0.585        
cufflinks 0.568        
cufflinks 0.004     Low Low
cufflinks 0.519        
cufflinks 0.012     Low Low

0 Strain