Gene : Glyma.12G109600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31343:SF3 - GB Genomic Order:  1096
Name:  ? Glyma.12G109600 Secondary Identifier:  ? PAC:30548205
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G109600 0.5kb upstream 0.5kb upstream 4953 true Chr12: 10403074-10408026 Glycine max
Glyma.12G109600 0.5kb upstream 0.5kb upstream 500 false Chr12: 10403074-10403573 Glycine max
Glyma.12G109600 0.5kb downstream 0.5kb downstream 4953 true Chr12: 10403574-10408526 Glycine max
Glyma.12G109600 0.5kb downstream 0.5kb downstream 500 false Chr12: 10408027-10408526 Glycine max
Glyma.12G109600 1.0kb upstream 1.0kb upstream 5453 true Chr12: 10402574-10408026 Glycine max
Glyma.12G109600 1.0kb upstream 1.0kb upstream 1000 false Chr12: 10402574-10403573 Glycine max
Glyma.12G109600 1.0kb downstream 1.0kb downstream 5453 true Chr12: 10403574-10409026 Glycine max
Glyma.12G109600 1.0kb downstream 1.0kb downstream 1000 false Chr12: 10408027-10409026 Glycine max
Glyma.12G109600 2.0kb upstream 2.0kb upstream 6453 true Chr12: 10401574-10408026 Glycine max
Glyma.12G109600 2.0kb upstream 2.0kb upstream 2000 false Chr12: 10401574-10403573 Glycine max
Glyma.12G109600 2.0kb downstream 2.0kb downstream 6453 true Chr12: 10403574-10410026 Glycine max
Glyma.12G109600 2.0kb downstream 2.0kb downstream 2000 false Chr12: 10408027-10410026 Glycine max
Glyma.12G109600 5.0kb upstream 5.0kb upstream 9453 true Chr12: 10398574-10408026 Glycine max
Glyma.12G109600 5.0kb upstream 5.0kb upstream 5000 false Chr12: 10398574-10403573 Glycine max
Glyma.12G109600 5.0kb downstream 5.0kb downstream 9453 true Chr12: 10403574-10413026 Glycine max
Glyma.12G109600 5.0kb downstream 5.0kb downstream 5000 false Chr12: 10408027-10413026 Glycine max
Glyma.12G109600 10.0kb upstream 10.0kb upstream 14453 true Chr12: 10393574-10408026 Glycine max
Glyma.12G109600 10.0kb upstream 10.0kb upstream 10000 false Chr12: 10393574-10403573 Glycine max
Glyma.12G109600 10.0kb downstream 10.0kb downstream 14453 true Chr12: 10403574-10418026 Glycine max
Glyma.12G109600 10.0kb downstream 10.0kb downstream 10000 false Chr12: 10408027-10418026 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314759 5265 Fabidae View MSA
124067567 5270 Rosid View MSA
123743761 5271 Pentapetalae View MSA
122791281 5272 Eudicot View MSA
122049858 5273 Angiosperm View MSA
121311619 5274 Embryophyte View MSA
123425809 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.55147 0.0 18.0265   Low
cufflinks 7.99623 0.0 27.3227    
cufflinks 14.2293 0.0 51.2759   High
cufflinks 12.055 0.0 39.0753   High
cufflinks 5.17172 0.0 19.7816    
cufflinks 6.75424 0.0 23.9835    
cufflinks 6.43855 0.0 23.5057    
cufflinks 7.51384 0.0 25.7907    
cufflinks 4.59679 0.0 17.8416   Low
cufflinks 0.653        
cufflinks 6.906     High High
cufflinks 2.316        
cufflinks 0.285       Low
cufflinks 0.273       Low
cufflinks 13.283     High High
cufflinks 1.061        
cufflinks 0.39       Low
cufflinks 2.05        
cufflinks 0.906        
cufflinks 1.428        
cufflinks 5.325       High
cufflinks 1.249        
cufflinks 0.984        
cufflinks 2.764        
cufflinks 1.428        
cufflinks 2.382        

0 Strain