Gene : Glyma.12G116900 G. max Wm82.a2.v1
Defline:  (1 of 5) PTHR14493:SF53 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 2-RELATED Genomic Order:  1169
Name:  ? Glyma.12G116900 Secondary Identifier:  ? PAC:30548567
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G116900 0.5kb upstream 0.5kb upstream 1814 true Chr12: 11711935-11713748 Glycine max
Glyma.12G116900 0.5kb upstream 0.5kb upstream 500 false Chr12: 11711935-11712434 Glycine max
Glyma.12G116900 0.5kb downstream 0.5kb downstream 1814 true Chr12: 11712435-11714248 Glycine max
Glyma.12G116900 0.5kb downstream 0.5kb downstream 500 false Chr12: 11713749-11714248 Glycine max
Glyma.12G116900 1.0kb upstream 1.0kb upstream 2314 true Chr12: 11711435-11713748 Glycine max
Glyma.12G116900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 11711435-11712434 Glycine max
Glyma.12G116900 1.0kb downstream 1.0kb downstream 2314 true Chr12: 11712435-11714748 Glycine max
Glyma.12G116900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 11713749-11714748 Glycine max
Glyma.12G116900 2.0kb upstream 2.0kb upstream 3314 true Chr12: 11710435-11713748 Glycine max
Glyma.12G116900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 11710435-11712434 Glycine max
Glyma.12G116900 2.0kb downstream 2.0kb downstream 3314 true Chr12: 11712435-11715748 Glycine max
Glyma.12G116900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 11713749-11715748 Glycine max
Glyma.12G116900 5.0kb upstream 5.0kb upstream 6314 true Chr12: 11707435-11713748 Glycine max
Glyma.12G116900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 11707435-11712434 Glycine max
Glyma.12G116900 5.0kb downstream 5.0kb downstream 6314 true Chr12: 11712435-11718748 Glycine max
Glyma.12G116900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 11713749-11718748 Glycine max
Glyma.12G116900 10.0kb upstream 10.0kb upstream 11314 true Chr12: 11702435-11713748 Glycine max
Glyma.12G116900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 11702435-11712434 Glycine max
Glyma.12G116900 10.0kb downstream 10.0kb downstream 11314 true Chr12: 11712435-11723748 Glycine max
Glyma.12G116900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 11713749-11723748 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298862 5265 Fabidae View MSA
124066464 5270 Rosid View MSA
123752127 5271 Pentapetalae View MSA
122796629 5272 Eudicot View MSA
122048745 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0642382 0.0 0.265016 Low  
cufflinks 2.24815 0.0 7.70289    
cufflinks 1.77088 0.0 6.18341    
cufflinks 0.142038 0.0 0.564105 Low  
cufflinks 82.2174 0.0 234.145 High High
cufflinks 0.0186741 0.0 0.0845184 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.04     Low  
cufflinks 0.095     Low High
cufflinks 0.012     Low  
cufflinks 0.06     Low  
cufflinks 0.087       High
cufflinks 0.013     Low  
cufflinks 0.011     Low Low
cufflinks 0.056     Low  
cufflinks 0.009     Low Low
cufflinks 0.013     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.027     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.044     Low  

0 Strain