Gene : Glyma.12G166100 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR24057:SF3 - SHAGGY-RELATED PROTEIN KINASE DELTA-RELATED Genomic Order:  1661
Name:  ? Glyma.12G166100 Secondary Identifier:  ? PAC:30546734
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G166100 0.5kb upstream 0.5kb upstream 7038 true Chr12: 32044731-32051768 Glycine max
Glyma.12G166100 0.5kb upstream 0.5kb upstream 500 false Chr12: 32044731-32045230 Glycine max
Glyma.12G166100 0.5kb downstream 0.5kb downstream 7038 true Chr12: 32045231-32052268 Glycine max
Glyma.12G166100 0.5kb downstream 0.5kb downstream 500 false Chr12: 32051769-32052268 Glycine max
Glyma.12G166100 1.0kb upstream 1.0kb upstream 7538 true Chr12: 32044231-32051768 Glycine max
Glyma.12G166100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 32044231-32045230 Glycine max
Glyma.12G166100 1.0kb downstream 1.0kb downstream 7538 true Chr12: 32045231-32052768 Glycine max
Glyma.12G166100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 32051769-32052768 Glycine max
Glyma.12G166100 2.0kb upstream 2.0kb upstream 8538 true Chr12: 32043231-32051768 Glycine max
Glyma.12G166100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 32043231-32045230 Glycine max
Glyma.12G166100 2.0kb downstream 2.0kb downstream 8538 true Chr12: 32045231-32053768 Glycine max
Glyma.12G166100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 32051769-32053768 Glycine max
Glyma.12G166100 5.0kb upstream 5.0kb upstream 11538 true Chr12: 32040231-32051768 Glycine max
Glyma.12G166100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 32040231-32045230 Glycine max
Glyma.12G166100 5.0kb downstream 5.0kb downstream 11538 true Chr12: 32045231-32056768 Glycine max
Glyma.12G166100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 32051769-32056768 Glycine max
Glyma.12G166100 10.0kb upstream 10.0kb upstream 16538 true Chr12: 32035231-32051768 Glycine max
Glyma.12G166100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 32035231-32045230 Glycine max
Glyma.12G166100 10.0kb downstream 10.0kb downstream 16538 true Chr12: 32045231-32061768 Glycine max
Glyma.12G166100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 32051769-32061768 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303161 5265 Fabidae View MSA
124062280 5270 Rosid View MSA
123738232 5271 Pentapetalae View MSA
122769916 5272 Eudicot View MSA
122046195 5273 Angiosperm View MSA
121310573 5274 Embryophyte View MSA
123427870 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 33.2512 0.0 137.889 High  
cufflinks 28.8408 0.0 115.25 High  
cufflinks 31.5002 0.0 129.005 High  
cufflinks 46.7573 0.0 204.973 High High
cufflinks 23.4022 0.0 91.9036 High  
cufflinks 18.5628 0.0 72.6538   Low
cufflinks 37.9812 0.0 137.465 High  
cufflinks 37.9477 0.0 160.089 High  
cufflinks 23.026 0.0 91.3181 High  
cufflinks 2.977        
cufflinks 0.815       Low
cufflinks 3.073        
cufflinks 1.895        
cufflinks 1.899        
cufflinks 1.035       Low
cufflinks 2.754        
cufflinks 1.045       Low
cufflinks 3.847       High
cufflinks 3.271        
cufflinks 3.123        
cufflinks 1.205       Low
cufflinks 3.247        
cufflinks 2.542        
cufflinks 1.121       Low
cufflinks 2.86        
cufflinks 1.367        

0 Strain