Gene : Glyma.12G157500 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR31104:SF1 - GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K15M2 Genomic Order:  1575
Name:  ? Glyma.12G157500 Secondary Identifier:  ? PAC:30548983
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G157500 0.5kb upstream 0.5kb upstream 3020 true Chr12: 26037849-26040868 Glycine max
Glyma.12G157500 0.5kb upstream 0.5kb upstream 500 false Chr12: 26040369-26040868 Glycine max
Glyma.12G157500 0.5kb downstream 0.5kb downstream 3020 true Chr12: 26037349-26040368 Glycine max
Glyma.12G157500 0.5kb downstream 0.5kb downstream 500 false Chr12: 26037349-26037848 Glycine max
Glyma.12G157500 1.0kb upstream 1.0kb upstream 3520 true Chr12: 26037849-26041368 Glycine max
Glyma.12G157500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 26040369-26041368 Glycine max
Glyma.12G157500 1.0kb downstream 1.0kb downstream 3520 true Chr12: 26036849-26040368 Glycine max
Glyma.12G157500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 26036849-26037848 Glycine max
Glyma.12G157500 2.0kb upstream 2.0kb upstream 4520 true Chr12: 26037849-26042368 Glycine max
Glyma.12G157500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 26040369-26042368 Glycine max
Glyma.12G157500 2.0kb downstream 2.0kb downstream 4520 true Chr12: 26035849-26040368 Glycine max
Glyma.12G157500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 26035849-26037848 Glycine max
Glyma.12G157500 5.0kb upstream 5.0kb upstream 7520 true Chr12: 26037849-26045368 Glycine max
Glyma.12G157500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 26040369-26045368 Glycine max
Glyma.12G157500 5.0kb downstream 5.0kb downstream 7520 true Chr12: 26032849-26040368 Glycine max
Glyma.12G157500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 26032849-26037848 Glycine max
Glyma.12G157500 10.0kb upstream 10.0kb upstream 12520 true Chr12: 26037849-26050368 Glycine max
Glyma.12G157500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 26040369-26050368 Glycine max
Glyma.12G157500 10.0kb downstream 10.0kb downstream 12520 true Chr12: 26027849-26040368 Glycine max
Glyma.12G157500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 26027849-26037848 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303010 5265 Fabidae View MSA
124072866 5270 Rosid View MSA
123749062 5271 Pentapetalae View MSA
122793704 5272 Eudicot View MSA
122047638 5273 Angiosperm View MSA
121344579 5274 Embryophyte View MSA
123380069 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.478097 0.0 1.74299   Low
cufflinks 8.60285 0.0 23.1839    
cufflinks 1.35927 0.0 4.5122    
cufflinks 6.84273 0.0 18.6701    
cufflinks 4.85393 0.0 13.6601    
cufflinks 1.95954 0.0 6.19457    
cufflinks 17.1414 0.0 45.8768   High
cufflinks 4.00168 0.0 11.47    
cufflinks 5.36949 0.0 14.9312    
cufflinks 4.774        
cufflinks 0.059       Low
cufflinks 3.924        
cufflinks 4.205        
cufflinks 6.608        
cufflinks 0.404        
cufflinks 3.041        
cufflinks 0.354        
cufflinks 5.078        
cufflinks 9.267     High High
cufflinks 2.618        
cufflinks 0.26       Low
cufflinks 2.507        
cufflinks 3.886        
cufflinks 0.101       Low
cufflinks 2.768        
cufflinks 0.405        

0 Strain