Gene : Glyma.12G193800 G. max Wm82.a2.v1
Defline:  (1 of 14) 4.2.1.3 - Aconitate hydratase / Citrate(isocitrate) hydro-lyase Genomic Order:  1938
Name:  ? Glyma.12G193800 Secondary Identifier:  ? PAC:30545857
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYOXYLATE-BYPASS Glycine max pathologic  
Gmax PWY-5464 Glycine max pathologic  
Gmax PWY-561 Glycine max pathologic  
Gmax PWY-5690 Glycine max pathologic  
Gmax PWY-6549 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G193800 0.5kb upstream 0.5kb upstream 8034 true Chr12: 35551096-35559129 Glycine max
Glyma.12G193800 0.5kb upstream 0.5kb upstream 500 false Chr12: 35551096-35551595 Glycine max
Glyma.12G193800 0.5kb downstream 0.5kb downstream 8034 true Chr12: 35551596-35559629 Glycine max
Glyma.12G193800 0.5kb downstream 0.5kb downstream 500 false Chr12: 35559130-35559629 Glycine max
Glyma.12G193800 1.0kb upstream 1.0kb upstream 8534 true Chr12: 35550596-35559129 Glycine max
Glyma.12G193800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 35550596-35551595 Glycine max
Glyma.12G193800 1.0kb downstream 1.0kb downstream 8534 true Chr12: 35551596-35560129 Glycine max
Glyma.12G193800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 35559130-35560129 Glycine max
Glyma.12G193800 2.0kb upstream 2.0kb upstream 9534 true Chr12: 35549596-35559129 Glycine max
Glyma.12G193800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 35549596-35551595 Glycine max
Glyma.12G193800 2.0kb downstream 2.0kb downstream 9534 true Chr12: 35551596-35561129 Glycine max
Glyma.12G193800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 35559130-35561129 Glycine max
Glyma.12G193800 5.0kb upstream 5.0kb upstream 12534 true Chr12: 35546596-35559129 Glycine max
Glyma.12G193800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 35546596-35551595 Glycine max
Glyma.12G193800 5.0kb downstream 5.0kb downstream 12534 true Chr12: 35551596-35564129 Glycine max
Glyma.12G193800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 35559130-35564129 Glycine max
Glyma.12G193800 10.0kb upstream 10.0kb upstream 17534 true Chr12: 35541596-35559129 Glycine max
Glyma.12G193800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 35541596-35551595 Glycine max
Glyma.12G193800 10.0kb downstream 10.0kb downstream 17534 true Chr12: 35551596-35569129 Glycine max
Glyma.12G193800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 35559130-35569129 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303297 5265 Fabidae View MSA
124069488 5270 Rosid View MSA
123752886 5271 Pentapetalae View MSA
122795491 5272 Eudicot View MSA
122043810 5273 Angiosperm View MSA
121344247 5274 Embryophyte View MSA
123428745 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.8671 0.0 113.712 High High
cufflinks 20.3492 0.0 56.437 High  
cufflinks 28.8168 0.0 83.3928 High  
cufflinks 28.3248 0.0 81.5943 High  
cufflinks 36.2524 0.0 108.242 High High
cufflinks 25.3586 0.0 72.1501 High  
cufflinks 10.2087 0.0 27.2731   Low
cufflinks 20.6553 0.0 57.4601    
cufflinks 18.3917 0.0 50.6227    
cufflinks 16.86     High  
cufflinks 4.813       Low
cufflinks 16.727     High  
cufflinks 26.923     High High
cufflinks 23.826     High High
cufflinks 8.633     High  
cufflinks 9.334     High  
cufflinks 20.608     High High
cufflinks 17.065     High  
cufflinks 15.39     High  
cufflinks 7.529     High  
cufflinks 5.491       Low
cufflinks 9.951     High  
cufflinks 12.794     High  
cufflinks 6.686     High Low
cufflinks 7.773     High  
cufflinks 11.148     High  

0 Strain