Gene : Glyma.12G188900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  1889
Name:  ? Glyma.12G188900 Secondary Identifier:  ? PAC:30548131
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G188900 0.5kb upstream 0.5kb upstream 2166 true Chr12: 35061900-35064065 Glycine max
Glyma.12G188900 0.5kb upstream 0.5kb upstream 500 false Chr12: 35061900-35062399 Glycine max
Glyma.12G188900 0.5kb downstream 0.5kb downstream 2166 true Chr12: 35062400-35064565 Glycine max
Glyma.12G188900 0.5kb downstream 0.5kb downstream 500 false Chr12: 35064066-35064565 Glycine max
Glyma.12G188900 1.0kb upstream 1.0kb upstream 2666 true Chr12: 35061400-35064065 Glycine max
Glyma.12G188900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 35061400-35062399 Glycine max
Glyma.12G188900 1.0kb downstream 1.0kb downstream 2666 true Chr12: 35062400-35065065 Glycine max
Glyma.12G188900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 35064066-35065065 Glycine max
Glyma.12G188900 2.0kb upstream 2.0kb upstream 3666 true Chr12: 35060400-35064065 Glycine max
Glyma.12G188900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 35060400-35062399 Glycine max
Glyma.12G188900 2.0kb downstream 2.0kb downstream 3666 true Chr12: 35062400-35066065 Glycine max
Glyma.12G188900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 35064066-35066065 Glycine max
Glyma.12G188900 5.0kb upstream 5.0kb upstream 6666 true Chr12: 35057400-35064065 Glycine max
Glyma.12G188900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 35057400-35062399 Glycine max
Glyma.12G188900 5.0kb downstream 5.0kb downstream 6666 true Chr12: 35062400-35069065 Glycine max
Glyma.12G188900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 35064066-35069065 Glycine max
Glyma.12G188900 10.0kb upstream 10.0kb upstream 11666 true Chr12: 35052400-35064065 Glycine max
Glyma.12G188900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 35052400-35062399 Glycine max
Glyma.12G188900 10.0kb downstream 10.0kb downstream 11666 true Chr12: 35062400-35074065 Glycine max
Glyma.12G188900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 35064066-35074065 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.86085 0.0 6.22217    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 1.94972 0.0 6.46876    
cufflinks 0.00689599 0.0 0.0331561 Low Low
cufflinks 0.661739 0.0 2.41556    
cufflinks 39.6667 0.0 108.912 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0500197 0.0 0.203852 Low  
cufflinks 0.616247 0.0 2.25723    
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 4.182        
cufflinks 0.764        
cufflinks 1.713        
cufflinks 1.061        
cufflinks 0.357        
cufflinks 0.047     Low Low
cufflinks 6.59     High  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.041     Low Low
cufflinks 9.842     High High
cufflinks 0.096        
cufflinks 0.009     Low Low
cufflinks 15.128     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 10.491     High High

0 Strain