Gene : Glyma.12G189900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR32295:SF12 - PROTEIN IQ-DOMAIN 15-RELATED Genomic Order:  1899
Name:  ? Glyma.12G189900 Secondary Identifier:  ? PAC:30546084
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G189900 0.5kb upstream 0.5kb upstream 7997 true Chr12: 35155970-35163966 Glycine max
Glyma.12G189900 0.5kb upstream 0.5kb upstream 500 false Chr12: 35163467-35163966 Glycine max
Glyma.12G189900 0.5kb downstream 0.5kb downstream 7997 true Chr12: 35155470-35163466 Glycine max
Glyma.12G189900 0.5kb downstream 0.5kb downstream 500 false Chr12: 35155470-35155969 Glycine max
Glyma.12G189900 1.0kb upstream 1.0kb upstream 8497 true Chr12: 35155970-35164466 Glycine max
Glyma.12G189900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 35163467-35164466 Glycine max
Glyma.12G189900 1.0kb downstream 1.0kb downstream 8497 true Chr12: 35154970-35163466 Glycine max
Glyma.12G189900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 35154970-35155969 Glycine max
Glyma.12G189900 2.0kb upstream 2.0kb upstream 9497 true Chr12: 35155970-35165466 Glycine max
Glyma.12G189900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 35163467-35165466 Glycine max
Glyma.12G189900 2.0kb downstream 2.0kb downstream 9497 true Chr12: 35153970-35163466 Glycine max
Glyma.12G189900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 35153970-35155969 Glycine max
Glyma.12G189900 5.0kb upstream 5.0kb upstream 12497 true Chr12: 35155970-35168466 Glycine max
Glyma.12G189900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 35163467-35168466 Glycine max
Glyma.12G189900 5.0kb downstream 5.0kb downstream 12497 true Chr12: 35150970-35163466 Glycine max
Glyma.12G189900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 35150970-35155969 Glycine max
Glyma.12G189900 10.0kb upstream 10.0kb upstream 17497 true Chr12: 35155970-35173466 Glycine max
Glyma.12G189900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 35163467-35173466 Glycine max
Glyma.12G189900 10.0kb downstream 10.0kb downstream 17497 true Chr12: 35145970-35163466 Glycine max
Glyma.12G189900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 35145970-35155969 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306492 5265 Fabidae View MSA
124066612 5270 Rosid View MSA
123736615 5271 Pentapetalae View MSA
122788189 5272 Eudicot View MSA
122046736 5273 Angiosperm View MSA
121351537 5274 Embryophyte View MSA
123382213 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.7651 0.0 37.388    
cufflinks 9.63993 0.0 33.7204    
cufflinks 5.2913 0.0 17.6462   Low
cufflinks 15.543 0.0 53.0923    
cufflinks 12.6374 0.0 43.365    
cufflinks 18.9942 0.0 65.3932   High
cufflinks 13.714 0.0 46.8612    
cufflinks 12.7811 0.0 43.7762    
cufflinks 14.4265 0.0 49.3566    
cufflinks 2.188        
cufflinks 0.694       Low
cufflinks 1.272        
cufflinks 1.978        
cufflinks 1.577        
cufflinks 0.996       Low
cufflinks 2.654       High
cufflinks 1.184        
cufflinks 1.918        
cufflinks 1.739        
cufflinks 2.622       High
cufflinks 1.094        
cufflinks 2.789       High
cufflinks 2.717       High
cufflinks 0.955       Low
cufflinks 2.534       High
cufflinks 1.1        

0 Strain