Gene : Glyma.12G180900 G. max Wm82.a2.v1
Defline:  (1 of 10) PTHR22950:SF319 - GABA TRANSPORTER 1 Genomic Order:  1809
Name:  ? Glyma.12G180900 Secondary Identifier:  ? PAC:30545938
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G180900 0.5kb upstream 0.5kb upstream 3317 true Chr12: 34148236-34151552 Glycine max
Glyma.12G180900 0.5kb upstream 0.5kb upstream 500 false Chr12: 34151053-34151552 Glycine max
Glyma.12G180900 0.5kb downstream 0.5kb downstream 3317 true Chr12: 34147736-34151052 Glycine max
Glyma.12G180900 0.5kb downstream 0.5kb downstream 500 false Chr12: 34147736-34148235 Glycine max
Glyma.12G180900 1.0kb upstream 1.0kb upstream 3817 true Chr12: 34148236-34152052 Glycine max
Glyma.12G180900 1.0kb upstream 1.0kb upstream 1000 false Chr12: 34151053-34152052 Glycine max
Glyma.12G180900 1.0kb downstream 1.0kb downstream 3817 true Chr12: 34147236-34151052 Glycine max
Glyma.12G180900 1.0kb downstream 1.0kb downstream 1000 false Chr12: 34147236-34148235 Glycine max
Glyma.12G180900 2.0kb upstream 2.0kb upstream 4817 true Chr12: 34148236-34153052 Glycine max
Glyma.12G180900 2.0kb upstream 2.0kb upstream 2000 false Chr12: 34151053-34153052 Glycine max
Glyma.12G180900 2.0kb downstream 2.0kb downstream 4817 true Chr12: 34146236-34151052 Glycine max
Glyma.12G180900 2.0kb downstream 2.0kb downstream 2000 false Chr12: 34146236-34148235 Glycine max
Glyma.12G180900 5.0kb upstream 5.0kb upstream 7817 true Chr12: 34148236-34156052 Glycine max
Glyma.12G180900 5.0kb upstream 5.0kb upstream 5000 false Chr12: 34151053-34156052 Glycine max
Glyma.12G180900 5.0kb downstream 5.0kb downstream 7817 true Chr12: 34143236-34151052 Glycine max
Glyma.12G180900 5.0kb downstream 5.0kb downstream 5000 false Chr12: 34143236-34148235 Glycine max
Glyma.12G180900 10.0kb upstream 10.0kb upstream 12817 true Chr12: 34148236-34161052 Glycine max
Glyma.12G180900 10.0kb upstream 10.0kb upstream 10000 false Chr12: 34151053-34161052 Glycine max
Glyma.12G180900 10.0kb downstream 10.0kb downstream 12817 true Chr12: 34138236-34151052 Glycine max
Glyma.12G180900 10.0kb downstream 10.0kb downstream 10000 false Chr12: 34138236-34148235 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122244870 5265 Fabidae Singleton cluster - no MSA
124038759 5270 Rosid View MSA
123752521 5271 Pentapetalae View MSA
122774612 5272 Eudicot View MSA
122051150 5273 Angiosperm View MSA
121349854 5274 Embryophyte View MSA
123381472 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.134483 0.0 0.543006 Low  
cufflinks 0.189074 0.0 0.752724 Low High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0476336 0.0 0.205678 Low Low
cufflinks 0.102379 0.0 0.418578 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.137067 0.0 0.552773 Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.013     Low  
cufflinks 0.113     Low High
cufflinks 0.052     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.007     Low Low
cufflinks 0.054     Low  
cufflinks 0.218       High
cufflinks 0.052     Low  
cufflinks 0.026     Low  
cufflinks 0.021     Low  
cufflinks 0.012     Low  
cufflinks 0.013     Low  
cufflinks 0.006     Low Low
cufflinks 0.007     Low Low
cufflinks 0.022     Low  

0 Strain