Gene : Glyma.12G233500 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR32285:SF30 - PROTEIN TRICHOME BIREFRINGENCE-LIKE 42 Genomic Order:  2335
Name:  ? Glyma.12G233500 Secondary Identifier:  ? PAC:30547472
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G233500 0.5kb upstream 0.5kb upstream 3005 true Chr12: 39269600-39272604 Glycine max
Glyma.12G233500 0.5kb upstream 0.5kb upstream 500 false Chr12: 39269600-39270099 Glycine max
Glyma.12G233500 0.5kb downstream 0.5kb downstream 3005 true Chr12: 39270100-39273104 Glycine max
Glyma.12G233500 0.5kb downstream 0.5kb downstream 500 false Chr12: 39272605-39273104 Glycine max
Glyma.12G233500 1.0kb upstream 1.0kb upstream 3505 true Chr12: 39269100-39272604 Glycine max
Glyma.12G233500 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39269100-39270099 Glycine max
Glyma.12G233500 1.0kb downstream 1.0kb downstream 3505 true Chr12: 39270100-39273604 Glycine max
Glyma.12G233500 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39272605-39273604 Glycine max
Glyma.12G233500 2.0kb upstream 2.0kb upstream 4505 true Chr12: 39268100-39272604 Glycine max
Glyma.12G233500 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39268100-39270099 Glycine max
Glyma.12G233500 2.0kb downstream 2.0kb downstream 4505 true Chr12: 39270100-39274604 Glycine max
Glyma.12G233500 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39272605-39274604 Glycine max
Glyma.12G233500 5.0kb upstream 5.0kb upstream 7505 true Chr12: 39265100-39272604 Glycine max
Glyma.12G233500 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39265100-39270099 Glycine max
Glyma.12G233500 5.0kb downstream 5.0kb downstream 7505 true Chr12: 39270100-39277604 Glycine max
Glyma.12G233500 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39272605-39277604 Glycine max
Glyma.12G233500 10.0kb upstream 10.0kb upstream 12505 true Chr12: 39260100-39272604 Glycine max
Glyma.12G233500 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39260100-39270099 Glycine max
Glyma.12G233500 10.0kb downstream 10.0kb downstream 12505 true Chr12: 39270100-39282604 Glycine max
Glyma.12G233500 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39272605-39282604 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122312045 5265 Fabidae View MSA
124063024 5270 Rosid View MSA
123753462 5271 Pentapetalae View MSA
122797188 5272 Eudicot View MSA
122050805 5273 Angiosperm View MSA
123428901 5275 Viridiplantae View MSA
121350671 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.32159 0.0 4.69795   Low
cufflinks 12.0243 0.0 32.9743   High
cufflinks 0.753223 0.0 2.76666   Low
cufflinks 5.36874 0.0 16.0891    
cufflinks 6.04214 0.0 17.8963    
cufflinks 7.82577 0.0 22.3769    
cufflinks 1.34612 0.0 4.78035   Low
cufflinks 4.09341 0.0 12.7462    
cufflinks 6.4035 0.0 18.7636    
cufflinks 3.969        
cufflinks 0.71       Low
cufflinks 1.308        
cufflinks 6.149        
cufflinks 4.605        
cufflinks 0.806       Low
cufflinks 7.029        
cufflinks 3.611        
cufflinks 1.606        
cufflinks 10.968     High High
cufflinks 5.444        
cufflinks 1.414        
cufflinks 6.228        
cufflinks 10.114     High High
cufflinks 0.787       Low
cufflinks 5.438        
cufflinks 1.83        

0 Strain