Gene : Glyma.12G220200 G. max Wm82.a2.v1
Defline:  (1 of 9) PF06830 - Root cap (Root_cap) Genomic Order:  2202
Name:  ? Glyma.12G220200 Secondary Identifier:  ? PAC:30548248
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G220200 0.5kb upstream 0.5kb upstream 3056 true Chr12: 37954957-37958012 Glycine max
Glyma.12G220200 0.5kb upstream 0.5kb upstream 500 false Chr12: 37957513-37958012 Glycine max
Glyma.12G220200 0.5kb downstream 0.5kb downstream 3056 true Chr12: 37954457-37957512 Glycine max
Glyma.12G220200 0.5kb downstream 0.5kb downstream 500 false Chr12: 37954457-37954956 Glycine max
Glyma.12G220200 1.0kb upstream 1.0kb upstream 3556 true Chr12: 37954957-37958512 Glycine max
Glyma.12G220200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 37957513-37958512 Glycine max
Glyma.12G220200 1.0kb downstream 1.0kb downstream 3556 true Chr12: 37953957-37957512 Glycine max
Glyma.12G220200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 37953957-37954956 Glycine max
Glyma.12G220200 2.0kb upstream 2.0kb upstream 4556 true Chr12: 37954957-37959512 Glycine max
Glyma.12G220200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 37957513-37959512 Glycine max
Glyma.12G220200 2.0kb downstream 2.0kb downstream 4556 true Chr12: 37952957-37957512 Glycine max
Glyma.12G220200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 37952957-37954956 Glycine max
Glyma.12G220200 5.0kb upstream 5.0kb upstream 7556 true Chr12: 37954957-37962512 Glycine max
Glyma.12G220200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 37957513-37962512 Glycine max
Glyma.12G220200 5.0kb downstream 5.0kb downstream 7556 true Chr12: 37949957-37957512 Glycine max
Glyma.12G220200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 37949957-37954956 Glycine max
Glyma.12G220200 10.0kb upstream 10.0kb upstream 12556 true Chr12: 37954957-37967512 Glycine max
Glyma.12G220200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 37957513-37967512 Glycine max
Glyma.12G220200 10.0kb downstream 10.0kb downstream 12556 true Chr12: 37944957-37957512 Glycine max
Glyma.12G220200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 37944957-37954956 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122239831 5265 Fabidae Singleton cluster - no MSA
124042471 5270 Rosid View MSA
123752203 5271 Pentapetalae View MSA
122797654 5272 Eudicot View MSA
122050447 5273 Angiosperm View MSA
121349873 5274 Embryophyte View MSA
123381481 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 15.5897 0.0 42.3408   High
cufflinks 6.16921 0.0 18.4281    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.650662 0.0 2.42171   Low
cufflinks 2.13785 0.0 7.35276    
cufflinks 0.075     Low  
cufflinks 0.016     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.544       High
cufflinks 4.383       High
cufflinks 0.029     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.063     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.026     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.038     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.089        

0 Strain