Gene : Glyma.12G208100 G. max Wm82.a2.v1
Defline:  (1 of 788) PF13041 - PPR repeat family (PPR_2) Genomic Order:  2081
Name:  ? Glyma.12G208100 Secondary Identifier:  ? PAC:30545703
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G208100 0.5kb upstream 0.5kb upstream 1958 true Chr12: 36764424-36766381 Glycine max
Glyma.12G208100 0.5kb upstream 0.5kb upstream 500 false Chr12: 36764424-36764923 Glycine max
Glyma.12G208100 0.5kb downstream 0.5kb downstream 1958 true Chr12: 36764924-36766881 Glycine max
Glyma.12G208100 0.5kb downstream 0.5kb downstream 500 false Chr12: 36766382-36766881 Glycine max
Glyma.12G208100 1.0kb upstream 1.0kb upstream 2458 true Chr12: 36763924-36766381 Glycine max
Glyma.12G208100 1.0kb upstream 1.0kb upstream 1000 false Chr12: 36763924-36764923 Glycine max
Glyma.12G208100 1.0kb downstream 1.0kb downstream 2458 true Chr12: 36764924-36767381 Glycine max
Glyma.12G208100 1.0kb downstream 1.0kb downstream 1000 false Chr12: 36766382-36767381 Glycine max
Glyma.12G208100 2.0kb upstream 2.0kb upstream 3458 true Chr12: 36762924-36766381 Glycine max
Glyma.12G208100 2.0kb upstream 2.0kb upstream 2000 false Chr12: 36762924-36764923 Glycine max
Glyma.12G208100 2.0kb downstream 2.0kb downstream 3458 true Chr12: 36764924-36768381 Glycine max
Glyma.12G208100 2.0kb downstream 2.0kb downstream 2000 false Chr12: 36766382-36768381 Glycine max
Glyma.12G208100 5.0kb upstream 5.0kb upstream 6458 true Chr12: 36759924-36766381 Glycine max
Glyma.12G208100 5.0kb upstream 5.0kb upstream 5000 false Chr12: 36759924-36764923 Glycine max
Glyma.12G208100 5.0kb downstream 5.0kb downstream 6458 true Chr12: 36764924-36771381 Glycine max
Glyma.12G208100 5.0kb downstream 5.0kb downstream 5000 false Chr12: 36766382-36771381 Glycine max
Glyma.12G208100 10.0kb upstream 10.0kb upstream 11458 true Chr12: 36754924-36766381 Glycine max
Glyma.12G208100 10.0kb upstream 10.0kb upstream 10000 false Chr12: 36754924-36764923 Glycine max
Glyma.12G208100 10.0kb downstream 10.0kb downstream 11458 true Chr12: 36764924-36776381 Glycine max
Glyma.12G208100 10.0kb downstream 10.0kb downstream 10000 false Chr12: 36766382-36776381 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791718 5273 Angiosperm View MSA
122300613 5265 Fabidae View MSA
124062312 5270 Rosid View MSA
123736889 5271 Pentapetalae View MSA
122787074 5272 Eudicot View MSA
121063019 5274 Embryophyte View MSA
123102806 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.58768 0.0 8.51415    
cufflinks 3.1937 0.0 10.1932    
cufflinks 1.72616 0.0 5.92456   Low
cufflinks 3.33809 0.0 10.5794    
cufflinks 3.63419 0.0 11.4112    
cufflinks 2.66301 0.0 8.72212    
cufflinks 3.69007 0.0 11.5723    
cufflinks 3.34826 0.0 10.6041    
cufflinks 3.11122 0.0 9.95947    
cufflinks 1.964       Low
cufflinks 3.966        
cufflinks 3.176        
cufflinks 3.862        
cufflinks 4.899        
cufflinks 4.963        
cufflinks 4.478        
cufflinks 1.225       Low
cufflinks 4.072        
cufflinks 3.775        
cufflinks 5.4       High
cufflinks 4.037        
cufflinks 5.242        
cufflinks 3.752        
cufflinks 3.631        
cufflinks 4.404        
cufflinks 3.027        

0 Strain