Gene : Glyma.12G235000 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR23198:SF4 - NUCLEOPORIN AUTOPEPTIDASE Genomic Order:  2350
Name:  ? Glyma.12G235000 Secondary Identifier:  ? PAC:30548266
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G235000 0.5kb upstream 0.5kb upstream 8360 true Chr12: 39419258-39427617 Glycine max
Glyma.12G235000 0.5kb upstream 0.5kb upstream 500 false Chr12: 39419258-39419757 Glycine max
Glyma.12G235000 0.5kb downstream 0.5kb downstream 8360 true Chr12: 39419758-39428117 Glycine max
Glyma.12G235000 0.5kb downstream 0.5kb downstream 500 false Chr12: 39427618-39428117 Glycine max
Glyma.12G235000 1.0kb upstream 1.0kb upstream 8860 true Chr12: 39418758-39427617 Glycine max
Glyma.12G235000 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39418758-39419757 Glycine max
Glyma.12G235000 1.0kb downstream 1.0kb downstream 8860 true Chr12: 39419758-39428617 Glycine max
Glyma.12G235000 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39427618-39428617 Glycine max
Glyma.12G235000 2.0kb upstream 2.0kb upstream 9860 true Chr12: 39417758-39427617 Glycine max
Glyma.12G235000 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39417758-39419757 Glycine max
Glyma.12G235000 2.0kb downstream 2.0kb downstream 9860 true Chr12: 39419758-39429617 Glycine max
Glyma.12G235000 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39427618-39429617 Glycine max
Glyma.12G235000 5.0kb upstream 5.0kb upstream 12860 true Chr12: 39414758-39427617 Glycine max
Glyma.12G235000 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39414758-39419757 Glycine max
Glyma.12G235000 5.0kb downstream 5.0kb downstream 12860 true Chr12: 39419758-39432617 Glycine max
Glyma.12G235000 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39427618-39432617 Glycine max
Glyma.12G235000 10.0kb upstream 10.0kb upstream 17860 true Chr12: 39409758-39427617 Glycine max
Glyma.12G235000 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39409758-39419757 Glycine max
Glyma.12G235000 10.0kb downstream 10.0kb downstream 17860 true Chr12: 39419758-39437617 Glycine max
Glyma.12G235000 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39427618-39437617 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307700 5265 Fabidae View MSA
124061864 5270 Rosid View MSA
123748776 5271 Pentapetalae View MSA
122797875 5272 Eudicot View MSA
122041710 5273 Angiosperm View MSA
121349617 5274 Embryophyte View MSA
123427472 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.857 0.0 31.8565    
cufflinks 10.7314 0.0 28.729    
cufflinks 15.0758 0.0 41.002   High
cufflinks 11.635 0.0 31.244    
cufflinks 11.6159 0.0 31.199    
cufflinks 10.1042 0.0 27.0244   Low
cufflinks 14.1831 0.0 38.4509   High
cufflinks 10.5474 0.0 28.24    
cufflinks 12.6751 0.0 34.159    
cufflinks 5.311        
cufflinks 31.139     High High
cufflinks 6.463        
cufflinks 5.588        
cufflinks 5.493        
cufflinks 26.613     High High
cufflinks 5.08        
cufflinks 6.515     High  
cufflinks 5.112        
cufflinks 6.06        
cufflinks 5.293        
cufflinks 17.509     High High
cufflinks 5.172        
cufflinks 4.608        
cufflinks 18.074     High High
cufflinks 5.049        
cufflinks 12.728     High  

0 Strain