Gene : Glyma.12G236800 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR12632//PTHR12632:SF15 - TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED Genomic Order:  2368
Name:  ? Glyma.12G236800 Secondary Identifier:  ? PAC:30545605
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G236800 0.5kb upstream 0.5kb upstream 6942 true Chr12: 39555181-39562122 Glycine max
Glyma.12G236800 0.5kb upstream 0.5kb upstream 500 false Chr12: 39561623-39562122 Glycine max
Glyma.12G236800 0.5kb downstream 0.5kb downstream 6942 true Chr12: 39554681-39561622 Glycine max
Glyma.12G236800 0.5kb downstream 0.5kb downstream 500 false Chr12: 39554681-39555180 Glycine max
Glyma.12G236800 1.0kb upstream 1.0kb upstream 7442 true Chr12: 39555181-39562622 Glycine max
Glyma.12G236800 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39561623-39562622 Glycine max
Glyma.12G236800 1.0kb downstream 1.0kb downstream 7442 true Chr12: 39554181-39561622 Glycine max
Glyma.12G236800 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39554181-39555180 Glycine max
Glyma.12G236800 2.0kb upstream 2.0kb upstream 8442 true Chr12: 39555181-39563622 Glycine max
Glyma.12G236800 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39561623-39563622 Glycine max
Glyma.12G236800 2.0kb downstream 2.0kb downstream 8442 true Chr12: 39553181-39561622 Glycine max
Glyma.12G236800 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39553181-39555180 Glycine max
Glyma.12G236800 5.0kb upstream 5.0kb upstream 11442 true Chr12: 39555181-39566622 Glycine max
Glyma.12G236800 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39561623-39566622 Glycine max
Glyma.12G236800 5.0kb downstream 5.0kb downstream 11442 true Chr12: 39550181-39561622 Glycine max
Glyma.12G236800 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39550181-39555180 Glycine max
Glyma.12G236800 10.0kb upstream 10.0kb upstream 16442 true Chr12: 39555181-39571622 Glycine max
Glyma.12G236800 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39561623-39571622 Glycine max
Glyma.12G236800 10.0kb downstream 10.0kb downstream 16442 true Chr12: 39545181-39561622 Glycine max
Glyma.12G236800 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39545181-39555180 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309499 5265 Fabidae View MSA
124069942 5270 Rosid View MSA
123747706 5271 Pentapetalae View MSA
122796368 5272 Eudicot View MSA
122043560 5273 Angiosperm View MSA
121349728 5274 Embryophyte View MSA
123424382 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.11548 0.0 7.85396   Low
cufflinks 3.87087 0.0 16.3371    
cufflinks 1.97994 0.0 7.46029   Low
cufflinks 20.0377 0.0 91.8106 High  
cufflinks 6.57013 0.0 30.7159    
cufflinks 21.9528 0.0 98.9235    
cufflinks 79.1271 0.0 418.179 High High
cufflinks 23.8936 0.0 109.161 High  
cufflinks 24.3215 0.0 111.339 High  
cufflinks 0.401       High
cufflinks 0.045     Low Low
cufflinks 0.192        
cufflinks 0.409       High
cufflinks 0.115        
cufflinks 0.29       High
cufflinks 0.065     Low  
cufflinks 0.352       High
cufflinks 0.14        
cufflinks 0.227        
cufflinks 0.07     Low  
cufflinks 0.078        
cufflinks 0.099        
cufflinks 0.138        
cufflinks 0.043     Low Low
cufflinks 0.08     Low  
cufflinks 0.055     Low Low

0 Strain