Gene : Glyma.12G238200 G. max Wm82.a2.v1
Defline:  (1 of 8) PTHR10366:SF425 - BRASSINOSTEROID METABOLIC PATHWAY PROTEIN BEN1 Genomic Order:  2382
Name:  ? Glyma.12G238200 Secondary Identifier:  ? PAC:30547903
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Sequence Feature Displayer

Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-2229 Glycine max pathologic  
Gmax PWY-2463 Glycine max pathologic  
Gmax PWY-2464 Glycine max pathologic  
Gmax PWY-2761 Glycine max pathologic  
Gmax PWY-5717 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.12G238200 0.5kb upstream 0.5kb upstream 2646 true Chr12: 39724608-39727253 Glycine max
Glyma.12G238200 0.5kb upstream 0.5kb upstream 500 false Chr12: 39726754-39727253 Glycine max
Glyma.12G238200 0.5kb downstream 0.5kb downstream 2646 true Chr12: 39724108-39726753 Glycine max
Glyma.12G238200 0.5kb downstream 0.5kb downstream 500 false Chr12: 39724108-39724607 Glycine max
Glyma.12G238200 1.0kb upstream 1.0kb upstream 3146 true Chr12: 39724608-39727753 Glycine max
Glyma.12G238200 1.0kb upstream 1.0kb upstream 1000 false Chr12: 39726754-39727753 Glycine max
Glyma.12G238200 1.0kb downstream 1.0kb downstream 3146 true Chr12: 39723608-39726753 Glycine max
Glyma.12G238200 1.0kb downstream 1.0kb downstream 1000 false Chr12: 39723608-39724607 Glycine max
Glyma.12G238200 2.0kb upstream 2.0kb upstream 4146 true Chr12: 39724608-39728753 Glycine max
Glyma.12G238200 2.0kb upstream 2.0kb upstream 2000 false Chr12: 39726754-39728753 Glycine max
Glyma.12G238200 2.0kb downstream 2.0kb downstream 4146 true Chr12: 39722608-39726753 Glycine max
Glyma.12G238200 2.0kb downstream 2.0kb downstream 2000 false Chr12: 39722608-39724607 Glycine max
Glyma.12G238200 5.0kb upstream 5.0kb upstream 7146 true Chr12: 39724608-39731753 Glycine max
Glyma.12G238200 5.0kb upstream 5.0kb upstream 5000 false Chr12: 39726754-39731753 Glycine max
Glyma.12G238200 5.0kb downstream 5.0kb downstream 7146 true Chr12: 39719608-39726753 Glycine max
Glyma.12G238200 5.0kb downstream 5.0kb downstream 5000 false Chr12: 39719608-39724607 Glycine max
Glyma.12G238200 10.0kb upstream 10.0kb upstream 12146 true Chr12: 39724608-39736753 Glycine max
Glyma.12G238200 10.0kb upstream 10.0kb upstream 10000 false Chr12: 39726754-39736753 Glycine max
Glyma.12G238200 10.0kb downstream 10.0kb downstream 12146 true Chr12: 39714608-39726753 Glycine max
Glyma.12G238200 10.0kb downstream 10.0kb downstream 10000 false Chr12: 39714608-39724607 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031301 5273 Angiosperm View MSA
122314530 5265 Fabidae View MSA
124066855 5270 Rosid View MSA
123745083 5271 Pentapetalae View MSA
122790638 5272 Eudicot View MSA
121300366 5274 Embryophyte View MSA
123428289 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.86097 0.0 17.1535   High
cufflinks 1.04161 0.0 3.73635    
cufflinks 1.41767 0.0 4.95284    
cufflinks 5.63714 0.0 16.5432   High
cufflinks 0.0530549 0.0 0.218013 Low  
cufflinks 0.0288085 0.0 0.12346 Low Low
cufflinks 0.0137237 0.0 0.0628572 Low Low
cufflinks 1.31129 0.0 4.61979    
cufflinks 0.122919 0.0 0.486956 Low  
cufflinks 10.381     High High
cufflinks 0.217        
cufflinks 1.074        
cufflinks 0.073     Low Low
cufflinks 0.014     Low Low
cufflinks 0.053       Low
cufflinks 0.619        
cufflinks 1.002        
cufflinks 1.296        
cufflinks 1.363        
cufflinks 0.399        
cufflinks 0.31        
cufflinks 1.072        
cufflinks 1.248        
cufflinks 0.653        
cufflinks 0.553        
cufflinks 2.348        

0 Strain