Gene : Glyma.13G077700 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00464//PF13947 - Serine hydroxymethyltransferase (SHMT) // Wall-associated receptor kinase galacturonan-binding (GUB_WAK_bind) Genomic Order:  777
Name:  ? Glyma.13G077700 Secondary Identifier:  ? PAC:30503768
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax GLYSYN-PWY Glycine max pathologic  
Gmax PWY-2161 Glycine max pathologic  
Gmax PWY-3841 Glycine max pathologic  
Gmax SER-GLYSYN-PWY Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G077700 0.5kb upstream 0.5kb upstream 5166 true Chr13: 18334896-18340061 Glycine max
Glyma.13G077700 0.5kb upstream 0.5kb upstream 500 false Chr13: 18334896-18335395 Glycine max
Glyma.13G077700 0.5kb downstream 0.5kb downstream 5166 true Chr13: 18335396-18340561 Glycine max
Glyma.13G077700 0.5kb downstream 0.5kb downstream 500 false Chr13: 18340062-18340561 Glycine max
Glyma.13G077700 1.0kb upstream 1.0kb upstream 5666 true Chr13: 18334396-18340061 Glycine max
Glyma.13G077700 1.0kb upstream 1.0kb upstream 1000 false Chr13: 18334396-18335395 Glycine max
Glyma.13G077700 1.0kb downstream 1.0kb downstream 5666 true Chr13: 18335396-18341061 Glycine max
Glyma.13G077700 1.0kb downstream 1.0kb downstream 1000 false Chr13: 18340062-18341061 Glycine max
Glyma.13G077700 2.0kb upstream 2.0kb upstream 6666 true Chr13: 18333396-18340061 Glycine max
Glyma.13G077700 2.0kb upstream 2.0kb upstream 2000 false Chr13: 18333396-18335395 Glycine max
Glyma.13G077700 2.0kb downstream 2.0kb downstream 6666 true Chr13: 18335396-18342061 Glycine max
Glyma.13G077700 2.0kb downstream 2.0kb downstream 2000 false Chr13: 18340062-18342061 Glycine max
Glyma.13G077700 5.0kb upstream 5.0kb upstream 9666 true Chr13: 18330396-18340061 Glycine max
Glyma.13G077700 5.0kb upstream 5.0kb upstream 5000 false Chr13: 18330396-18335395 Glycine max
Glyma.13G077700 5.0kb downstream 5.0kb downstream 9666 true Chr13: 18335396-18345061 Glycine max
Glyma.13G077700 5.0kb downstream 5.0kb downstream 5000 false Chr13: 18340062-18345061 Glycine max
Glyma.13G077700 10.0kb upstream 10.0kb upstream 14666 true Chr13: 18325396-18340061 Glycine max
Glyma.13G077700 10.0kb upstream 10.0kb upstream 10000 false Chr13: 18325396-18335395 Glycine max
Glyma.13G077700 10.0kb downstream 10.0kb downstream 14666 true Chr13: 18335396-18350061 Glycine max
Glyma.13G077700 10.0kb downstream 10.0kb downstream 10000 false Chr13: 18340062-18350061 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314360 5265 Fabidae View MSA
124074660 5270 Rosid View MSA
123751004 5271 Pentapetalae View MSA
122794811 5272 Eudicot View MSA
122051146 5273 Angiosperm View MSA
121312314 5274 Embryophyte View MSA
123349498 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.216182 0.0 0.856389 Low  
cufflinks 0.231851 0.0 0.915581 Low  
cufflinks 0.32422 0.0 1.26285   High
cufflinks 0.0287435 0.0 0.128979 Low Low
cufflinks 0.092144 0.0 0.378638 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0710301 0.0 0.296593 Low  
cufflinks 0.132228 0.0 0.533417 Low  
cufflinks 0.106203 0.0 0.432675 Low  
cufflinks 0.085     Low  
cufflinks 0.012     Low Low
cufflinks 0.203       High
cufflinks 0.064     Low  
cufflinks 0.131        
cufflinks 0.024     Low  
cufflinks 0.151        
cufflinks 0.012     Low Low
cufflinks 0.154        
cufflinks 0.203       High
cufflinks 0.078     Low  
cufflinks 0.015     Low Low
cufflinks 0.089     Low  
cufflinks 0.138        
cufflinks 0.025     Low  
cufflinks 0.155        
cufflinks 0.005     Low Low

0 Strain