Gene : Glyma.13G053300 G. max Wm82.a2.v1
Defline:  (1 of 6) PTHR31673:SF3 - COBRA-LIKE EXTRACELLULAR GLYCOSYL-PHOSPHATIDYL INOSITOL-ANCHORED FAMILY PROTEIN-RELATED Genomic Order:  533
Name:  ? Glyma.13G053300 Secondary Identifier:  ? PAC:30501315
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G053300 0.5kb upstream 0.5kb upstream 5305 true Chr13: 15064460-15069764 Glycine max
Glyma.13G053300 0.5kb upstream 0.5kb upstream 500 false Chr13: 15069265-15069764 Glycine max
Glyma.13G053300 0.5kb downstream 0.5kb downstream 5305 true Chr13: 15063960-15069264 Glycine max
Glyma.13G053300 0.5kb downstream 0.5kb downstream 500 false Chr13: 15063960-15064459 Glycine max
Glyma.13G053300 1.0kb upstream 1.0kb upstream 5805 true Chr13: 15064460-15070264 Glycine max
Glyma.13G053300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 15069265-15070264 Glycine max
Glyma.13G053300 1.0kb downstream 1.0kb downstream 5805 true Chr13: 15063460-15069264 Glycine max
Glyma.13G053300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 15063460-15064459 Glycine max
Glyma.13G053300 2.0kb upstream 2.0kb upstream 6805 true Chr13: 15064460-15071264 Glycine max
Glyma.13G053300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 15069265-15071264 Glycine max
Glyma.13G053300 2.0kb downstream 2.0kb downstream 6805 true Chr13: 15062460-15069264 Glycine max
Glyma.13G053300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 15062460-15064459 Glycine max
Glyma.13G053300 5.0kb upstream 5.0kb upstream 9805 true Chr13: 15064460-15074264 Glycine max
Glyma.13G053300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 15069265-15074264 Glycine max
Glyma.13G053300 5.0kb downstream 5.0kb downstream 9805 true Chr13: 15059460-15069264 Glycine max
Glyma.13G053300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 15059460-15064459 Glycine max
Glyma.13G053300 10.0kb upstream 10.0kb upstream 14805 true Chr13: 15064460-15079264 Glycine max
Glyma.13G053300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 15069265-15079264 Glycine max
Glyma.13G053300 10.0kb downstream 10.0kb downstream 14805 true Chr13: 15054460-15069264 Glycine max
Glyma.13G053300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 15054460-15064459 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311980 5265 Fabidae View MSA
124062933 5270 Rosid View MSA
123750183 5271 Pentapetalae View MSA
122789403 5272 Eudicot View MSA
122044037 5273 Angiosperm View MSA
121349086 5274 Embryophyte View MSA
123381159 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0125074 0.0 0.0664853 Low  
cufflinks 0.00295912 0.0 0.0368106 Low Low
cufflinks 0.312635 0.0 1.53874    
cufflinks 0.221486 0.0 1.1196 Low  
cufflinks 0.00849198 0.0 0.0498243 Low  
cufflinks 0.601566 0.0 2.77073   High
cufflinks 0.0475091 0.0 0.195108 Low  
cufflinks 0.441804 0.0 2.85316    
cufflinks 0.008     Low  
cufflinks 0.677       High
cufflinks 0.015     Low  
cufflinks 0.002     Low Low
cufflinks 0.002     Low Low
cufflinks 3.347       High
cufflinks 0.033     Low  
cufflinks 0.189        
cufflinks 0.035     Low  
cufflinks 0.003     Low Low
cufflinks 0.078     Low  
cufflinks 1.263       High
cufflinks 0.073     Low  
cufflinks 0.044     Low  
cufflinks 0.158        
cufflinks 0.037     Low  
cufflinks 0.546       High

0 Strain