Gene : Glyma.13G100900 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR11954:SF20 - MACROPHAGE MIGRATION INHIBITORY FACTOR FAMILY PROTEIN Genomic Order:  1009
Name:  ? Glyma.13G100900 Secondary Identifier:  ? PAC:30504618
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-6498 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G100900 0.5kb upstream 0.5kb upstream 2103 true Chr13: 21608539-21610641 Glycine max
Glyma.13G100900 0.5kb upstream 0.5kb upstream 500 false Chr13: 21608539-21609038 Glycine max
Glyma.13G100900 0.5kb downstream 0.5kb downstream 2103 true Chr13: 21609039-21611141 Glycine max
Glyma.13G100900 0.5kb downstream 0.5kb downstream 500 false Chr13: 21610642-21611141 Glycine max
Glyma.13G100900 1.0kb upstream 1.0kb upstream 2603 true Chr13: 21608039-21610641 Glycine max
Glyma.13G100900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 21608039-21609038 Glycine max
Glyma.13G100900 1.0kb downstream 1.0kb downstream 2603 true Chr13: 21609039-21611641 Glycine max
Glyma.13G100900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 21610642-21611641 Glycine max
Glyma.13G100900 2.0kb upstream 2.0kb upstream 3603 true Chr13: 21607039-21610641 Glycine max
Glyma.13G100900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 21607039-21609038 Glycine max
Glyma.13G100900 2.0kb downstream 2.0kb downstream 3603 true Chr13: 21609039-21612641 Glycine max
Glyma.13G100900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 21610642-21612641 Glycine max
Glyma.13G100900 5.0kb upstream 5.0kb upstream 6603 true Chr13: 21604039-21610641 Glycine max
Glyma.13G100900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 21604039-21609038 Glycine max
Glyma.13G100900 5.0kb downstream 5.0kb downstream 6603 true Chr13: 21609039-21615641 Glycine max
Glyma.13G100900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 21610642-21615641 Glycine max
Glyma.13G100900 10.0kb upstream 10.0kb upstream 11603 true Chr13: 21599039-21610641 Glycine max
Glyma.13G100900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 21599039-21609038 Glycine max
Glyma.13G100900 10.0kb downstream 10.0kb downstream 11603 true Chr13: 21609039-21620641 Glycine max
Glyma.13G100900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 21610642-21620641 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307923 5265 Fabidae View MSA
124068416 5270 Rosid View MSA
123740780 5271 Pentapetalae View MSA
122787200 5272 Eudicot View MSA
122044871 5273 Angiosperm View MSA
121349175 5274 Embryophyte View MSA
123424544 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.6283 0.0 124.632 High High
cufflinks 25.339 0.0 82.4339 High High
cufflinks 5.08607 0.0 20.0457    
cufflinks 7.05311 0.0 25.5319    
cufflinks 7.81997 0.0 27.4398    
cufflinks 7.87698 0.0 27.6862    
cufflinks 6.96338 0.0 25.7575    
cufflinks 8.98201 0.0 53.3227    
cufflinks 5.15463 0.0 20.0498    
cufflinks 4.156        
cufflinks 0.323       Low
cufflinks 1.777        
cufflinks 1.923        
cufflinks 2.66        
cufflinks 0.321       Low
cufflinks 16.378     High High
cufflinks 0.734        
cufflinks 2.576        
cufflinks 4.81        
cufflinks 19.6     High High
cufflinks 0.272       Low
cufflinks 17.107     High High
cufflinks 14.738     High High
cufflinks 0.33       Low
cufflinks 20.283     High High
cufflinks 0.445       Low

0 Strain