Gene : Glyma.13G085400 G. max Wm82.a2.v1
Defline:  (1 of 2) PTHR21297:SF1 - DNA-DIRECTED RNA POLYMERASE II PROTEIN Genomic Order:  854
Name:  ? Glyma.13G085400 Secondary Identifier:  ? PAC:30500565
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G085400 0.5kb upstream 0.5kb upstream 9916 true Chr13: 19705658-19715573 Glycine max
Glyma.13G085400 0.5kb upstream 0.5kb upstream 500 false Chr13: 19715074-19715573 Glycine max
Glyma.13G085400 0.5kb downstream 0.5kb downstream 9916 true Chr13: 19705158-19715073 Glycine max
Glyma.13G085400 0.5kb downstream 0.5kb downstream 500 false Chr13: 19705158-19705657 Glycine max
Glyma.13G085400 1.0kb upstream 1.0kb upstream 10416 true Chr13: 19705658-19716073 Glycine max
Glyma.13G085400 1.0kb upstream 1.0kb upstream 1000 false Chr13: 19715074-19716073 Glycine max
Glyma.13G085400 1.0kb downstream 1.0kb downstream 10416 true Chr13: 19704658-19715073 Glycine max
Glyma.13G085400 1.0kb downstream 1.0kb downstream 1000 false Chr13: 19704658-19705657 Glycine max
Glyma.13G085400 2.0kb upstream 2.0kb upstream 11416 true Chr13: 19705658-19717073 Glycine max
Glyma.13G085400 2.0kb upstream 2.0kb upstream 2000 false Chr13: 19715074-19717073 Glycine max
Glyma.13G085400 2.0kb downstream 2.0kb downstream 11416 true Chr13: 19703658-19715073 Glycine max
Glyma.13G085400 2.0kb downstream 2.0kb downstream 2000 false Chr13: 19703658-19705657 Glycine max
Glyma.13G085400 5.0kb upstream 5.0kb upstream 14416 true Chr13: 19705658-19720073 Glycine max
Glyma.13G085400 5.0kb upstream 5.0kb upstream 5000 false Chr13: 19715074-19720073 Glycine max
Glyma.13G085400 5.0kb downstream 5.0kb downstream 14416 true Chr13: 19700658-19715073 Glycine max
Glyma.13G085400 5.0kb downstream 5.0kb downstream 5000 false Chr13: 19700658-19705657 Glycine max
Glyma.13G085400 10.0kb upstream 10.0kb upstream 19416 true Chr13: 19705658-19725073 Glycine max
Glyma.13G085400 10.0kb upstream 10.0kb upstream 10000 false Chr13: 19715074-19725073 Glycine max
Glyma.13G085400 10.0kb downstream 10.0kb downstream 19416 true Chr13: 19695658-19715073 Glycine max
Glyma.13G085400 10.0kb downstream 10.0kb downstream 10000 false Chr13: 19695658-19705657 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041351 5273 Angiosperm View MSA
122303516 5265 Fabidae View MSA
124068509 5270 Rosid View MSA
123739960 5271 Pentapetalae View MSA
122791365 5272 Eudicot View MSA
121346749 5274 Embryophyte View MSA
123424526 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.79969 0.0 16.7006    
cufflinks 4.87566 0.0 16.8521    
cufflinks 13.3529 0.0 39.6242   High
cufflinks 6.01823 0.0 19.7905    
cufflinks 4.77163 0.0 16.4994    
cufflinks 5.67162 0.0 18.8445    
cufflinks 4.76217 0.0 16.6009    
cufflinks 5.14327 0.0 17.4665    
cufflinks 6.20196 0.0 20.2592    
cufflinks 0.691       Low
cufflinks 1.277        
cufflinks 2.072       High
cufflinks 0.679       Low
cufflinks 0.626       Low
cufflinks 1.141        
cufflinks 1.174        
cufflinks 0.75       Low
cufflinks 1.763       High
cufflinks 1.116        
cufflinks 1.312        
cufflinks 1.204        
cufflinks 1.274        
cufflinks 0.769       Low
cufflinks 1.509        
cufflinks 1.128        
cufflinks 1.068        

0 Strain