Gene : Glyma.13G111900 G. max Wm82.a2.v1
Defline:  (1 of 62) PF12708 - Pectate lyase superfamily protein (Pectate_lyase_3) Genomic Order:  1119
Name:  ? Glyma.13G111900 Secondary Identifier:  ? PAC:30502123
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G111900 0.5kb upstream 0.5kb upstream 8146 true Chr13: 22523971-22532116 Glycine max
Glyma.13G111900 0.5kb upstream 0.5kb upstream 500 false Chr13: 22523971-22524470 Glycine max
Glyma.13G111900 0.5kb downstream 0.5kb downstream 8146 true Chr13: 22524471-22532616 Glycine max
Glyma.13G111900 0.5kb downstream 0.5kb downstream 500 false Chr13: 22532117-22532616 Glycine max
Glyma.13G111900 1.0kb upstream 1.0kb upstream 8646 true Chr13: 22523471-22532116 Glycine max
Glyma.13G111900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 22523471-22524470 Glycine max
Glyma.13G111900 1.0kb downstream 1.0kb downstream 8646 true Chr13: 22524471-22533116 Glycine max
Glyma.13G111900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 22532117-22533116 Glycine max
Glyma.13G111900 2.0kb upstream 2.0kb upstream 9646 true Chr13: 22522471-22532116 Glycine max
Glyma.13G111900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 22522471-22524470 Glycine max
Glyma.13G111900 2.0kb downstream 2.0kb downstream 9646 true Chr13: 22524471-22534116 Glycine max
Glyma.13G111900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 22532117-22534116 Glycine max
Glyma.13G111900 5.0kb upstream 5.0kb upstream 12646 true Chr13: 22519471-22532116 Glycine max
Glyma.13G111900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 22519471-22524470 Glycine max
Glyma.13G111900 5.0kb downstream 5.0kb downstream 12646 true Chr13: 22524471-22537116 Glycine max
Glyma.13G111900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 22532117-22537116 Glycine max
Glyma.13G111900 10.0kb upstream 10.0kb upstream 17646 true Chr13: 22514471-22532116 Glycine max
Glyma.13G111900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 22514471-22524470 Glycine max
Glyma.13G111900 10.0kb downstream 10.0kb downstream 17646 true Chr13: 22524471-22542116 Glycine max
Glyma.13G111900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 22532117-22542116 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026431 5273 Angiosperm View MSA
122302558 5265 Fabidae View MSA
124066643 5270 Rosid View MSA
123751274 5271 Pentapetalae View MSA
122794411 5272 Eudicot View MSA
121348629 5274 Embryophyte View MSA
123380947 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.6841 0.0 56.598    
cufflinks 20.4198 0.0 91.0536 High  
cufflinks 8.1612 0.0 36.194   Low
cufflinks 33.8466 0.0 156.542 High High
cufflinks 17.8693 0.0 80.4088    
cufflinks 18.488 0.0 78.4506    
cufflinks 32.2354 0.0 154.005 High High
cufflinks 31.6382 0.0 140.885 High High
cufflinks 15.8782 0.0 65.8041    
cufflinks 1.83        
cufflinks 0.373       Low
cufflinks 1.03        
cufflinks 1.289        
cufflinks 1.235        
cufflinks 0.303       Low
cufflinks 2.555       High
cufflinks 0.748        
cufflinks 1.863        
cufflinks 1.939        
cufflinks 1.928        
cufflinks 0.527       Low
cufflinks 2.254        
cufflinks 2.771       High
cufflinks 0.432       Low
cufflinks 2.101        
cufflinks 0.652        

0 Strain