Gene : Glyma.13G131600 G. max Wm82.a2.v1
Defline:  (1 of 16) PF13041//PF13812 - PPR repeat family (PPR_2) // Pentatricopeptide repeat domain (PPR_3) Genomic Order:  1316
Name:  ? Glyma.13G131600 Secondary Identifier:  ? PAC:30505808
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G131600 0.5kb upstream 0.5kb upstream 3398 true Chr13: 24418717-24422114 Glycine max
Glyma.13G131600 0.5kb upstream 0.5kb upstream 500 false Chr13: 24418717-24419216 Glycine max
Glyma.13G131600 0.5kb downstream 0.5kb downstream 3398 true Chr13: 24419217-24422614 Glycine max
Glyma.13G131600 0.5kb downstream 0.5kb downstream 500 false Chr13: 24422115-24422614 Glycine max
Glyma.13G131600 1.0kb upstream 1.0kb upstream 3898 true Chr13: 24418217-24422114 Glycine max
Glyma.13G131600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 24418217-24419216 Glycine max
Glyma.13G131600 1.0kb downstream 1.0kb downstream 3898 true Chr13: 24419217-24423114 Glycine max
Glyma.13G131600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 24422115-24423114 Glycine max
Glyma.13G131600 2.0kb upstream 2.0kb upstream 4898 true Chr13: 24417217-24422114 Glycine max
Glyma.13G131600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 24417217-24419216 Glycine max
Glyma.13G131600 2.0kb downstream 2.0kb downstream 4898 true Chr13: 24419217-24424114 Glycine max
Glyma.13G131600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 24422115-24424114 Glycine max
Glyma.13G131600 5.0kb upstream 5.0kb upstream 7898 true Chr13: 24414217-24422114 Glycine max
Glyma.13G131600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 24414217-24419216 Glycine max
Glyma.13G131600 5.0kb downstream 5.0kb downstream 7898 true Chr13: 24419217-24427114 Glycine max
Glyma.13G131600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 24422115-24427114 Glycine max
Glyma.13G131600 10.0kb upstream 10.0kb upstream 12898 true Chr13: 24409217-24422114 Glycine max
Glyma.13G131600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 24409217-24419216 Glycine max
Glyma.13G131600 10.0kb downstream 10.0kb downstream 12898 true Chr13: 24419217-24432114 Glycine max
Glyma.13G131600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 24422115-24432114 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304408 5265 Fabidae View MSA
124068324 5270 Rosid View MSA
123737648 5271 Pentapetalae View MSA
122793672 5272 Eudicot View MSA
122045784 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.3699 0.0 33.0682   High
cufflinks 6.48376 0.0 17.4893    
cufflinks 2.91896 0.0 8.42461    
cufflinks 4.14569 0.0 11.5266    
cufflinks 3.36951 0.0 9.5505    
cufflinks 1.44641 0.0 4.59538   Low
cufflinks 3.28643 0.0 9.34534    
cufflinks 3.63757 0.0 10.248    
cufflinks 2.78023 0.0 8.07209    
cufflinks 3.298        
cufflinks 0.578       Low
cufflinks 5.863        
cufflinks 2.352        
cufflinks 3.488        
cufflinks 1.208        
cufflinks 11.926     High High
cufflinks 0.703       Low
cufflinks 6.345        
cufflinks 7.322        
cufflinks 14.996     High High
cufflinks 0.524       Low
cufflinks 14.199     High High
cufflinks 13.5     High High
cufflinks 0.492       Low
cufflinks 13.211     High High
cufflinks 0.717       Low

0 Strain