Gene : Glyma.13G174300 G. max Wm82.a2.v1
Defline:  (1 of 3) PTHR13301//PTHR13301:SF41 - X-BOX TRANSCRIPTION FACTOR-RELATED Genomic Order:  1743
Name:  ? Glyma.13G174300 Secondary Identifier:  ? PAC:30505684
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-1001 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G174300 0.5kb upstream 0.5kb upstream 4895 true Chr13: 28844973-28849867 Glycine max
Glyma.13G174300 0.5kb upstream 0.5kb upstream 500 false Chr13: 28849368-28849867 Glycine max
Glyma.13G174300 0.5kb downstream 0.5kb downstream 4895 true Chr13: 28844473-28849367 Glycine max
Glyma.13G174300 0.5kb downstream 0.5kb downstream 500 false Chr13: 28844473-28844972 Glycine max
Glyma.13G174300 1.0kb upstream 1.0kb upstream 5395 true Chr13: 28844973-28850367 Glycine max
Glyma.13G174300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 28849368-28850367 Glycine max
Glyma.13G174300 1.0kb downstream 1.0kb downstream 5395 true Chr13: 28843973-28849367 Glycine max
Glyma.13G174300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 28843973-28844972 Glycine max
Glyma.13G174300 2.0kb upstream 2.0kb upstream 6395 true Chr13: 28844973-28851367 Glycine max
Glyma.13G174300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 28849368-28851367 Glycine max
Glyma.13G174300 2.0kb downstream 2.0kb downstream 6395 true Chr13: 28842973-28849367 Glycine max
Glyma.13G174300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 28842973-28844972 Glycine max
Glyma.13G174300 5.0kb upstream 5.0kb upstream 9395 true Chr13: 28844973-28854367 Glycine max
Glyma.13G174300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 28849368-28854367 Glycine max
Glyma.13G174300 5.0kb downstream 5.0kb downstream 9395 true Chr13: 28839973-28849367 Glycine max
Glyma.13G174300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 28839973-28844972 Glycine max
Glyma.13G174300 10.0kb upstream 10.0kb upstream 14395 true Chr13: 28844973-28859367 Glycine max
Glyma.13G174300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 28849368-28859367 Glycine max
Glyma.13G174300 10.0kb downstream 10.0kb downstream 14395 true Chr13: 28834973-28849367 Glycine max
Glyma.13G174300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 28834973-28844972 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309823 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.48 0.0 53.0603   High
cufflinks 0.318706 0.0 1.55582    
cufflinks 18.7011 0.0 65.4843   High
cufflinks 0.515249 0.0 2.33156    
cufflinks 0.122881 0.0 0.477516 Low  
cufflinks 0.0164693 0.0 0.073898 Low Low
cufflinks 5.38506 0.0 20.3768    
cufflinks 0.542174 0.0 2.44021    
cufflinks 0.469794 0.0 2.12522    
cufflinks 0.211        
cufflinks 0.391        
cufflinks 7.527     High High
cufflinks 0.013     Low Low
cufflinks 0.024     Low Low
cufflinks 0.154        
cufflinks 1.268        
cufflinks 0.023     Low Low
cufflinks 1.597        
cufflinks 0.172        
cufflinks 1.379        
cufflinks 0.162        
cufflinks 1.744        
cufflinks 0.461        
cufflinks 0.232        
cufflinks 2.098       High
cufflinks 0.096        

0 Strain