Gene : Glyma.13G162300 G. max Wm82.a2.v1
Defline:  (1 of 4) KOG1867 - Ubiquitin-specific protease Genomic Order:  1623
Name:  ? Glyma.13G162300 Secondary Identifier:  ? PAC:30501324
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G162300 0.5kb upstream 0.5kb upstream 5229 true Chr13: 27773991-27779219 Glycine max
Glyma.13G162300 0.5kb upstream 0.5kb upstream 500 false Chr13: 27778720-27779219 Glycine max
Glyma.13G162300 0.5kb downstream 0.5kb downstream 5229 true Chr13: 27773491-27778719 Glycine max
Glyma.13G162300 0.5kb downstream 0.5kb downstream 500 false Chr13: 27773491-27773990 Glycine max
Glyma.13G162300 1.0kb upstream 1.0kb upstream 5729 true Chr13: 27773991-27779719 Glycine max
Glyma.13G162300 1.0kb upstream 1.0kb upstream 1000 false Chr13: 27778720-27779719 Glycine max
Glyma.13G162300 1.0kb downstream 1.0kb downstream 5729 true Chr13: 27772991-27778719 Glycine max
Glyma.13G162300 1.0kb downstream 1.0kb downstream 1000 false Chr13: 27772991-27773990 Glycine max
Glyma.13G162300 2.0kb upstream 2.0kb upstream 6729 true Chr13: 27773991-27780719 Glycine max
Glyma.13G162300 2.0kb upstream 2.0kb upstream 2000 false Chr13: 27778720-27780719 Glycine max
Glyma.13G162300 2.0kb downstream 2.0kb downstream 6729 true Chr13: 27771991-27778719 Glycine max
Glyma.13G162300 2.0kb downstream 2.0kb downstream 2000 false Chr13: 27771991-27773990 Glycine max
Glyma.13G162300 5.0kb upstream 5.0kb upstream 9729 true Chr13: 27773991-27783719 Glycine max
Glyma.13G162300 5.0kb upstream 5.0kb upstream 5000 false Chr13: 27778720-27783719 Glycine max
Glyma.13G162300 5.0kb downstream 5.0kb downstream 9729 true Chr13: 27768991-27778719 Glycine max
Glyma.13G162300 5.0kb downstream 5.0kb downstream 5000 false Chr13: 27768991-27773990 Glycine max
Glyma.13G162300 10.0kb upstream 10.0kb upstream 14729 true Chr13: 27773991-27788719 Glycine max
Glyma.13G162300 10.0kb upstream 10.0kb upstream 10000 false Chr13: 27778720-27788719 Glycine max
Glyma.13G162300 10.0kb downstream 10.0kb downstream 14729 true Chr13: 27763991-27778719 Glycine max
Glyma.13G162300 10.0kb downstream 10.0kb downstream 10000 false Chr13: 27763991-27773990 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122304291 5265 Fabidae View MSA
124070704 5270 Rosid View MSA
123736956 5271 Pentapetalae View MSA
122795648 5272 Eudicot View MSA
122047391 5273 Angiosperm View MSA
121345894 5274 Embryophyte View MSA
123428412 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.96007 0.0 8.85343    
cufflinks 2.33714 0.0 7.25329    
cufflinks 1.37933 0.0 4.61916   Low
cufflinks 3.57892 0.0 10.467    
cufflinks 3.70439 0.0 10.6986   High
cufflinks 2.36372 0.0 7.28099    
cufflinks 3.69784 0.0 10.7218   High
cufflinks 2.82309 0.0 8.52181    
cufflinks 2.17299 0.0 6.78383    
cufflinks 0.99        
cufflinks 0.534       Low
cufflinks 0.938        
cufflinks 1.627       High
cufflinks 2.079       High
cufflinks 0.525       Low
cufflinks 1.159        
cufflinks 0.771        
cufflinks 1.407        
cufflinks 1.174        
cufflinks 1.073        
cufflinks 0.8        
cufflinks 1.087        
cufflinks 0.852        
cufflinks 0.67       Low
cufflinks 1.024        
cufflinks 1.082        

0 Strain