Gene : Glyma.13G148600 G. max Wm82.a2.v1
Defline:  (1 of 2) 4.3.1.19 - Threonine ammonia-lyase / Threonine dehydratase Genomic Order:  1486
Name:  ? Glyma.13G148600 Secondary Identifier:  ? PAC:30504337
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax BRANCHED-CHAIN-AA-SYN-PWY Glycine max pathologic  
Gmax ILEUSYN-PWY Glycine max pathologic  
Gmax PWY-3001 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G148600 0.5kb upstream 0.5kb upstream 5287 true Chr13: 26211287-26216573 Glycine max
Glyma.13G148600 0.5kb upstream 0.5kb upstream 500 false Chr13: 26211287-26211786 Glycine max
Glyma.13G148600 0.5kb downstream 0.5kb downstream 5287 true Chr13: 26211787-26217073 Glycine max
Glyma.13G148600 0.5kb downstream 0.5kb downstream 500 false Chr13: 26216574-26217073 Glycine max
Glyma.13G148600 1.0kb upstream 1.0kb upstream 5787 true Chr13: 26210787-26216573 Glycine max
Glyma.13G148600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 26210787-26211786 Glycine max
Glyma.13G148600 1.0kb downstream 1.0kb downstream 5787 true Chr13: 26211787-26217573 Glycine max
Glyma.13G148600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 26216574-26217573 Glycine max
Glyma.13G148600 2.0kb upstream 2.0kb upstream 6787 true Chr13: 26209787-26216573 Glycine max
Glyma.13G148600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 26209787-26211786 Glycine max
Glyma.13G148600 2.0kb downstream 2.0kb downstream 6787 true Chr13: 26211787-26218573 Glycine max
Glyma.13G148600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 26216574-26218573 Glycine max
Glyma.13G148600 5.0kb upstream 5.0kb upstream 9787 true Chr13: 26206787-26216573 Glycine max
Glyma.13G148600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 26206787-26211786 Glycine max
Glyma.13G148600 5.0kb downstream 5.0kb downstream 9787 true Chr13: 26211787-26221573 Glycine max
Glyma.13G148600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 26216574-26221573 Glycine max
Glyma.13G148600 10.0kb upstream 10.0kb upstream 14787 true Chr13: 26201787-26216573 Glycine max
Glyma.13G148600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 26201787-26211786 Glycine max
Glyma.13G148600 10.0kb downstream 10.0kb downstream 14787 true Chr13: 26211787-26226573 Glycine max
Glyma.13G148600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 26216574-26226573 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040897 5273 Angiosperm View MSA
122301821 5265 Fabidae View MSA
124062087 5270 Rosid View MSA
123737037 5271 Pentapetalae View MSA
122787691 5272 Eudicot View MSA
121344792 5274 Embryophyte View MSA
123427671 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.23397 0.0 12.079   Low
cufflinks 14.6437 0.0 39.0745    
cufflinks 8.44491 0.0 22.7888    
cufflinks 14.7952 0.0 39.4844    
cufflinks 9.70134 0.0 26.0169    
cufflinks 2.77435 0.0 8.36035   Low
cufflinks 7.46593 0.0 20.2679    
cufflinks 26.4613 0.0 72.2116 High High
cufflinks 6.61001 0.0 18.098    
cufflinks 10.65     High High
cufflinks 0.874       Low
cufflinks 5.661       High
cufflinks 3.278        
cufflinks 4.231        
cufflinks 1.373        
cufflinks 1.398        
cufflinks 1.644        
cufflinks 7.878     High High
cufflinks 10.853     High High
cufflinks 0.812       Low
cufflinks 1.196        
cufflinks 1.175        
cufflinks 2.132        
cufflinks 0.978        
cufflinks 0.897       Low
cufflinks 2.686        

0 Strain