Gene : Glyma.13G202800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR14493:SF47 - ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 56 Genomic Order:  2028
Name:  ? Glyma.13G202800 Secondary Identifier:  ? PAC:30505895
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G202800 0.5kb upstream 0.5kb upstream 4370 true Chr13: 31657405-31661774 Glycine max
Glyma.13G202800 0.5kb upstream 0.5kb upstream 500 false Chr13: 31657405-31657904 Glycine max
Glyma.13G202800 0.5kb downstream 0.5kb downstream 4370 true Chr13: 31657905-31662274 Glycine max
Glyma.13G202800 0.5kb downstream 0.5kb downstream 500 false Chr13: 31661775-31662274 Glycine max
Glyma.13G202800 1.0kb upstream 1.0kb upstream 4870 true Chr13: 31656905-31661774 Glycine max
Glyma.13G202800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 31656905-31657904 Glycine max
Glyma.13G202800 1.0kb downstream 1.0kb downstream 4870 true Chr13: 31657905-31662774 Glycine max
Glyma.13G202800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 31661775-31662774 Glycine max
Glyma.13G202800 2.0kb upstream 2.0kb upstream 5870 true Chr13: 31655905-31661774 Glycine max
Glyma.13G202800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 31655905-31657904 Glycine max
Glyma.13G202800 2.0kb downstream 2.0kb downstream 5870 true Chr13: 31657905-31663774 Glycine max
Glyma.13G202800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 31661775-31663774 Glycine max
Glyma.13G202800 5.0kb upstream 5.0kb upstream 8870 true Chr13: 31652905-31661774 Glycine max
Glyma.13G202800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 31652905-31657904 Glycine max
Glyma.13G202800 5.0kb downstream 5.0kb downstream 8870 true Chr13: 31657905-31666774 Glycine max
Glyma.13G202800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 31661775-31666774 Glycine max
Glyma.13G202800 10.0kb upstream 10.0kb upstream 13870 true Chr13: 31647905-31661774 Glycine max
Glyma.13G202800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 31647905-31657904 Glycine max
Glyma.13G202800 10.0kb downstream 10.0kb downstream 13870 true Chr13: 31657905-31671774 Glycine max
Glyma.13G202800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 31661775-31671774 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122298884 5265 Fabidae View MSA
124070984 5270 Rosid View MSA
123746400 5271 Pentapetalae View MSA
122787606 5272 Eudicot View MSA
122046013 5273 Angiosperm View MSA
123429052 5275 Viridiplantae View MSA
121351105 5274 Embryophyte View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 30.1711 0.0 86.1679 High  
cufflinks 31.782 0.0 91.4164 High  
cufflinks 40.4471 0.0 120.44 High  
cufflinks 40.6339 0.0 120.974 High  
cufflinks 44.1344 0.0 133.218 High High
cufflinks 32.799 0.0 94.9637 High  
cufflinks 18.1166 0.0 49.287   Low
cufflinks 32.7238 0.0 94.6438 High  
cufflinks 33.6579 0.0 97.7335 High  
cufflinks 19.739     High  
cufflinks 6.986     High Low
cufflinks 54.304     High High
cufflinks 25.44     High  
cufflinks 29.022     High  
cufflinks 10.693     High  
cufflinks 30.01     High  
cufflinks 4.017       Low
cufflinks 47.163     High High
cufflinks 26.619     High  
cufflinks 25.634     High  
cufflinks 4.664       Low
cufflinks 29.673     High  
cufflinks 28.364     High  
cufflinks 10.606     High  
cufflinks 26.062     High  
cufflinks 5.13       Low

0 Strain