Gene : Glyma.13G180100 G. max Wm82.a2.v1
Defline:  (1 of 1) PF00004//PF02933//PF07724 - ATPase family associated with various cellular activities (AAA) (AAA) // Cell division protein 48 (CDC48), domain 2 (CDC48_2) // AAA domain (Cdc48 subfamily) (AAA_2) Genomic Order:  1801
Name:  ? Glyma.13G180100 Secondary Identifier:  ? PAC:30504626
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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G180100 0.5kb upstream 0.5kb upstream 11895 true Chr13: 29340116-29352010 Glycine max
Glyma.13G180100 0.5kb upstream 0.5kb upstream 500 false Chr13: 29340116-29340615 Glycine max
Glyma.13G180100 0.5kb downstream 0.5kb downstream 11895 true Chr13: 29340616-29352510 Glycine max
Glyma.13G180100 0.5kb downstream 0.5kb downstream 500 false Chr13: 29352011-29352510 Glycine max
Glyma.13G180100 1.0kb upstream 1.0kb upstream 12395 true Chr13: 29339616-29352010 Glycine max
Glyma.13G180100 1.0kb upstream 1.0kb upstream 1000 false Chr13: 29339616-29340615 Glycine max
Glyma.13G180100 1.0kb downstream 1.0kb downstream 12395 true Chr13: 29340616-29353010 Glycine max
Glyma.13G180100 1.0kb downstream 1.0kb downstream 1000 false Chr13: 29352011-29353010 Glycine max
Glyma.13G180100 2.0kb upstream 2.0kb upstream 13395 true Chr13: 29338616-29352010 Glycine max
Glyma.13G180100 2.0kb upstream 2.0kb upstream 2000 false Chr13: 29338616-29340615 Glycine max
Glyma.13G180100 2.0kb downstream 2.0kb downstream 13395 true Chr13: 29340616-29354010 Glycine max
Glyma.13G180100 2.0kb downstream 2.0kb downstream 2000 false Chr13: 29352011-29354010 Glycine max
Glyma.13G180100 5.0kb upstream 5.0kb upstream 16395 true Chr13: 29335616-29352010 Glycine max
Glyma.13G180100 5.0kb upstream 5.0kb upstream 5000 false Chr13: 29335616-29340615 Glycine max
Glyma.13G180100 5.0kb downstream 5.0kb downstream 16395 true Chr13: 29340616-29357010 Glycine max
Glyma.13G180100 5.0kb downstream 5.0kb downstream 5000 false Chr13: 29352011-29357010 Glycine max
Glyma.13G180100 10.0kb upstream 10.0kb upstream 21395 true Chr13: 29330616-29352010 Glycine max
Glyma.13G180100 10.0kb upstream 10.0kb upstream 10000 false Chr13: 29330616-29340615 Glycine max
Glyma.13G180100 10.0kb downstream 10.0kb downstream 21395 true Chr13: 29340616-29362010 Glycine max
Glyma.13G180100 10.0kb downstream 10.0kb downstream 10000 false Chr13: 29352011-29362010 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303184 5265 Fabidae View MSA
124065880 5270 Rosid View MSA
123748878 5271 Pentapetalae View MSA
122787277 5272 Eudicot View MSA
122044573 5273 Angiosperm View MSA
121350302 5274 Embryophyte View MSA
123424602 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.7297 0.0 26.0264   Low
cufflinks 11.5793 0.0 30.896    
cufflinks 9.4331 0.0 25.2374   Low
cufflinks 14.008 0.0 37.4132    
cufflinks 15.215 0.0 40.6911    
cufflinks 19.2967 0.0 52.0691   High
cufflinks 9.16571 0.0 24.5681   Low
cufflinks 14.5123 0.0 38.7844    
cufflinks 13.8818 0.0 37.07    
cufflinks 3.614       High
cufflinks 3.031        
cufflinks 2.272        
cufflinks 3.99       High
cufflinks 3.992       High
cufflinks 2.175       Low
cufflinks 2.417        
cufflinks 2.055       Low
cufflinks 3.083        
cufflinks 2.831        
cufflinks 2.272        
cufflinks 3.511        
cufflinks 2.38        
cufflinks 2.448        
cufflinks 3.174        
cufflinks 2.165       Low
cufflinks 3.867       High

0 Strain