Gene : Glyma.13G213500 G. max Wm82.a2.v1
Defline:  (1 of 13) 2.2.1.7 - 1-deoxy-D-xylulose-5-phosphate synthase / DXP-synthase Genomic Order:  2135
Name:  ? Glyma.13G213500 Secondary Identifier:  ? PAC:30500165
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7560 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G213500 0.5kb upstream 0.5kb upstream 5258 true Chr13: 32711173-32716430 Glycine max
Glyma.13G213500 0.5kb upstream 0.5kb upstream 500 false Chr13: 32711173-32711672 Glycine max
Glyma.13G213500 0.5kb downstream 0.5kb downstream 5258 true Chr13: 32711673-32716930 Glycine max
Glyma.13G213500 0.5kb downstream 0.5kb downstream 500 false Chr13: 32716431-32716930 Glycine max
Glyma.13G213500 1.0kb upstream 1.0kb upstream 5758 true Chr13: 32710673-32716430 Glycine max
Glyma.13G213500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 32710673-32711672 Glycine max
Glyma.13G213500 1.0kb downstream 1.0kb downstream 5758 true Chr13: 32711673-32717430 Glycine max
Glyma.13G213500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 32716431-32717430 Glycine max
Glyma.13G213500 2.0kb upstream 2.0kb upstream 6758 true Chr13: 32709673-32716430 Glycine max
Glyma.13G213500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 32709673-32711672 Glycine max
Glyma.13G213500 2.0kb downstream 2.0kb downstream 6758 true Chr13: 32711673-32718430 Glycine max
Glyma.13G213500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 32716431-32718430 Glycine max
Glyma.13G213500 5.0kb upstream 5.0kb upstream 9758 true Chr13: 32706673-32716430 Glycine max
Glyma.13G213500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 32706673-32711672 Glycine max
Glyma.13G213500 5.0kb downstream 5.0kb downstream 9758 true Chr13: 32711673-32721430 Glycine max
Glyma.13G213500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 32716431-32721430 Glycine max
Glyma.13G213500 10.0kb upstream 10.0kb upstream 14758 true Chr13: 32701673-32716430 Glycine max
Glyma.13G213500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 32701673-32711672 Glycine max
Glyma.13G213500 10.0kb downstream 10.0kb downstream 14758 true Chr13: 32711673-32726430 Glycine max
Glyma.13G213500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 32716431-32726430 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310498 5265 Fabidae View MSA
124069132 5270 Rosid View MSA
123739716 5271 Pentapetalae View MSA
122785691 5272 Eudicot View MSA
122043887 5273 Angiosperm View MSA
121350299 5274 Embryophyte View MSA
123428527 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.81504 0.0 13.2691    
cufflinks 20.7966 0.0 56.7586 High High
cufflinks 3.69522 0.0 10.4149    
cufflinks 14.4506 0.0 38.7395    
cufflinks 5.91694 0.0 16.076    
cufflinks 3.07219 0.0 8.86124    
cufflinks 18.7802 0.0 50.9235    
cufflinks 21.0132 0.0 57.4409   High
cufflinks 1.88459 0.0 5.81206   Low
cufflinks 15.426     High High
cufflinks 0.205       Low
cufflinks 4.998        
cufflinks 1.211        
cufflinks 1.268        
cufflinks 0.037     Low Low
cufflinks 12.004     High  
cufflinks 0.566        
cufflinks 9.284     High  
cufflinks 13.883     High  
cufflinks 9.003     High  
cufflinks 0.182       Low
cufflinks 10.288     High  
cufflinks 11.402     High  
cufflinks 0.104       Low
cufflinks 11.954     High  
cufflinks 0.391        

0 Strain