Gene : Glyma.13G239500 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR12313//PTHR12313:SF6 - RNF5 Genomic Order:  2395
Name:  ? Glyma.13G239500 Secondary Identifier:  ? PAC:30504390
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G239500 0.5kb upstream 0.5kb upstream 2858 true Chr13: 34986306-34989163 Glycine max
Glyma.13G239500 0.5kb upstream 0.5kb upstream 500 false Chr13: 34986306-34986805 Glycine max
Glyma.13G239500 0.5kb downstream 0.5kb downstream 2858 true Chr13: 34986806-34989663 Glycine max
Glyma.13G239500 0.5kb downstream 0.5kb downstream 500 false Chr13: 34989164-34989663 Glycine max
Glyma.13G239500 1.0kb upstream 1.0kb upstream 3358 true Chr13: 34985806-34989163 Glycine max
Glyma.13G239500 1.0kb upstream 1.0kb upstream 1000 false Chr13: 34985806-34986805 Glycine max
Glyma.13G239500 1.0kb downstream 1.0kb downstream 3358 true Chr13: 34986806-34990163 Glycine max
Glyma.13G239500 1.0kb downstream 1.0kb downstream 1000 false Chr13: 34989164-34990163 Glycine max
Glyma.13G239500 2.0kb upstream 2.0kb upstream 4358 true Chr13: 34984806-34989163 Glycine max
Glyma.13G239500 2.0kb upstream 2.0kb upstream 2000 false Chr13: 34984806-34986805 Glycine max
Glyma.13G239500 2.0kb downstream 2.0kb downstream 4358 true Chr13: 34986806-34991163 Glycine max
Glyma.13G239500 2.0kb downstream 2.0kb downstream 2000 false Chr13: 34989164-34991163 Glycine max
Glyma.13G239500 5.0kb upstream 5.0kb upstream 7358 true Chr13: 34981806-34989163 Glycine max
Glyma.13G239500 5.0kb upstream 5.0kb upstream 5000 false Chr13: 34981806-34986805 Glycine max
Glyma.13G239500 5.0kb downstream 5.0kb downstream 7358 true Chr13: 34986806-34994163 Glycine max
Glyma.13G239500 5.0kb downstream 5.0kb downstream 5000 false Chr13: 34989164-34994163 Glycine max
Glyma.13G239500 10.0kb upstream 10.0kb upstream 12358 true Chr13: 34976806-34989163 Glycine max
Glyma.13G239500 10.0kb upstream 10.0kb upstream 10000 false Chr13: 34976806-34986805 Glycine max
Glyma.13G239500 10.0kb downstream 10.0kb downstream 12358 true Chr13: 34986806-34999163 Glycine max
Glyma.13G239500 10.0kb downstream 10.0kb downstream 10000 false Chr13: 34989164-34999163 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309912 5265 Fabidae View MSA
124070721 5270 Rosid View MSA
123750753 5271 Pentapetalae View MSA
122796389 5272 Eudicot View MSA
122051949 5273 Angiosperm View MSA
121312825 5274 Embryophyte View MSA
123428794 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.7826 0.0 17.3925   Low
cufflinks 8.08834 0.0 29.3003    
cufflinks 21.3087 0.0 63.7777 High High
cufflinks 12.0578 0.0 39.1839    
cufflinks 10.2777 0.0 34.6738    
cufflinks 26.3781 0.0 77.9869 High High
cufflinks 5.14141 0.0 21.2403   Low
cufflinks 11.4704 0.0 37.5854    
cufflinks 7.90547 0.0 28.6056    
cufflinks 3.446        
cufflinks 3.601        
cufflinks 6.438        
cufflinks 2.528       Low
cufflinks 2.21       Low
cufflinks 8.38     High High
cufflinks 7.547     High High
cufflinks 3.118        
cufflinks 5.874        
cufflinks 2.121       Low
cufflinks 7.924     High High
cufflinks 3.153        
cufflinks 4.876        
cufflinks 2.63        
cufflinks 2.852        
cufflinks 8.667     High High
cufflinks 4.755        

0 Strain