Gene : Glyma.13G279600 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR31008:SF4 - COP1-INTERACTING PROTEIN 7 (CIP7) Genomic Order:  2796
Name:  ? Glyma.13G279600 Secondary Identifier:  ? PAC:30503741
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G279600 0.5kb upstream 0.5kb upstream 8215 true Chr13: 38084849-38093063 Glycine max
Glyma.13G279600 0.5kb upstream 0.5kb upstream 500 false Chr13: 38092564-38093063 Glycine max
Glyma.13G279600 0.5kb downstream 0.5kb downstream 8215 true Chr13: 38084349-38092563 Glycine max
Glyma.13G279600 0.5kb downstream 0.5kb downstream 500 false Chr13: 38084349-38084848 Glycine max
Glyma.13G279600 1.0kb upstream 1.0kb upstream 8715 true Chr13: 38084849-38093563 Glycine max
Glyma.13G279600 1.0kb upstream 1.0kb upstream 1000 false Chr13: 38092564-38093563 Glycine max
Glyma.13G279600 1.0kb downstream 1.0kb downstream 8715 true Chr13: 38083849-38092563 Glycine max
Glyma.13G279600 1.0kb downstream 1.0kb downstream 1000 false Chr13: 38083849-38084848 Glycine max
Glyma.13G279600 2.0kb upstream 2.0kb upstream 9715 true Chr13: 38084849-38094563 Glycine max
Glyma.13G279600 2.0kb upstream 2.0kb upstream 2000 false Chr13: 38092564-38094563 Glycine max
Glyma.13G279600 2.0kb downstream 2.0kb downstream 9715 true Chr13: 38082849-38092563 Glycine max
Glyma.13G279600 2.0kb downstream 2.0kb downstream 2000 false Chr13: 38082849-38084848 Glycine max
Glyma.13G279600 5.0kb upstream 5.0kb upstream 12715 true Chr13: 38084849-38097563 Glycine max
Glyma.13G279600 5.0kb upstream 5.0kb upstream 5000 false Chr13: 38092564-38097563 Glycine max
Glyma.13G279600 5.0kb downstream 5.0kb downstream 12715 true Chr13: 38079849-38092563 Glycine max
Glyma.13G279600 5.0kb downstream 5.0kb downstream 5000 false Chr13: 38079849-38084848 Glycine max
Glyma.13G279600 10.0kb upstream 10.0kb upstream 17715 true Chr13: 38084849-38102563 Glycine max
Glyma.13G279600 10.0kb upstream 10.0kb upstream 10000 false Chr13: 38092564-38102563 Glycine max
Glyma.13G279600 10.0kb downstream 10.0kb downstream 17715 true Chr13: 38074849-38092563 Glycine max
Glyma.13G279600 10.0kb downstream 10.0kb downstream 10000 false Chr13: 38074849-38084848 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302091 5265 Fabidae View MSA
124068447 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.82769 0.0 12.9115    
cufflinks 6.24949 0.0 16.6749    
cufflinks 5.1364 0.0 13.7133    
cufflinks 11.7827 0.0 32.2647    
cufflinks 9.26004 0.0 24.936    
cufflinks 20.7941 0.0 60.3701   High
cufflinks 4.37178 0.0 11.7312   Low
cufflinks 15.8378 0.0 44.6315   High
cufflinks 6.58404 0.0 17.5742    
cufflinks 13.62     High High
cufflinks 0.632       Low
cufflinks 4.953        
cufflinks 13.85     High High
cufflinks 7.696     High  
cufflinks 0.173       Low
cufflinks 3.606        
cufflinks 1.896        
cufflinks 10.835     High High
cufflinks 5.04        
cufflinks 2.393        
cufflinks 1.42        
cufflinks 3.233        
cufflinks 2.536        
cufflinks 0.481       Low
cufflinks 3.364        
cufflinks 2.591        

0 Strain