Gene : Glyma.13G312800 G. max Wm82.a2.v1
Defline:  (1 of 4) PTHR22849:SF0 - WD REPEAT, SAM AND U-BOX DOMAIN-CONTAINING PROTEIN 1 Genomic Order:  3128
Name:  ? Glyma.13G312800 Secondary Identifier:  ? PAC:30504154
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Gmax PWY-7511 Glycine max pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G312800 0.5kb upstream 0.5kb upstream 2121 true Chr13: 40797465-40799585 Glycine max
Glyma.13G312800 0.5kb upstream 0.5kb upstream 500 false Chr13: 40799086-40799585 Glycine max
Glyma.13G312800 0.5kb downstream 0.5kb downstream 2121 true Chr13: 40796965-40799085 Glycine max
Glyma.13G312800 0.5kb downstream 0.5kb downstream 500 false Chr13: 40796965-40797464 Glycine max
Glyma.13G312800 1.0kb upstream 1.0kb upstream 2621 true Chr13: 40797465-40800085 Glycine max
Glyma.13G312800 1.0kb upstream 1.0kb upstream 1000 false Chr13: 40799086-40800085 Glycine max
Glyma.13G312800 1.0kb downstream 1.0kb downstream 2621 true Chr13: 40796465-40799085 Glycine max
Glyma.13G312800 1.0kb downstream 1.0kb downstream 1000 false Chr13: 40796465-40797464 Glycine max
Glyma.13G312800 2.0kb upstream 2.0kb upstream 3621 true Chr13: 40797465-40801085 Glycine max
Glyma.13G312800 2.0kb upstream 2.0kb upstream 2000 false Chr13: 40799086-40801085 Glycine max
Glyma.13G312800 2.0kb downstream 2.0kb downstream 3621 true Chr13: 40795465-40799085 Glycine max
Glyma.13G312800 2.0kb downstream 2.0kb downstream 2000 false Chr13: 40795465-40797464 Glycine max
Glyma.13G312800 5.0kb upstream 5.0kb upstream 6621 true Chr13: 40797465-40804085 Glycine max
Glyma.13G312800 5.0kb upstream 5.0kb upstream 5000 false Chr13: 40799086-40804085 Glycine max
Glyma.13G312800 5.0kb downstream 5.0kb downstream 6621 true Chr13: 40792465-40799085 Glycine max
Glyma.13G312800 5.0kb downstream 5.0kb downstream 5000 false Chr13: 40792465-40797464 Glycine max
Glyma.13G312800 10.0kb upstream 10.0kb upstream 11621 true Chr13: 40797465-40809085 Glycine max
Glyma.13G312800 10.0kb upstream 10.0kb upstream 10000 false Chr13: 40799086-40809085 Glycine max
Glyma.13G312800 10.0kb downstream 10.0kb downstream 11621 true Chr13: 40787465-40799085 Glycine max
Glyma.13G312800 10.0kb downstream 10.0kb downstream 10000 false Chr13: 40787465-40797464 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310390 5265 Fabidae View MSA
124070283 5270 Rosid View MSA
123752134 5271 Pentapetalae View MSA
122795209 5272 Eudicot View MSA
122048631 5273 Angiosperm View MSA
121351063 5274 Embryophyte View MSA
123428864 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.680131 0.0 2.47954    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 3.53776 0.0 10.8042    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.724489 0.0 2.63197    
cufflinks 30.3045 0.0 81.7276 High High
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0126875 0.0 0.0574233 Low Low
cufflinks 0.311423 0.0 1.17991    
cufflinks 0.01     Low Low
cufflinks 3.394        
cufflinks 1.119        
cufflinks 1.29        
cufflinks 1.077        
cufflinks 0.194        
cufflinks 0.046     Low  
cufflinks 5.301        
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.01     Low Low
cufflinks 0.01     Low Low
cufflinks 6.28     High High
cufflinks 0.081     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 8.228     High High
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 7.155     High High

0 Strain