Gene : Glyma.13G346900 G. max Wm82.a2.v1
Defline:  (1 of 2) PF06741//PF07145//PF14438 - LsmAD domain (LsmAD) // Ataxin-2 C-terminal region (PAM2) // Ataxin 2 SM domain (SM-ATX) Genomic Order:  3469
Name:  ? Glyma.13G346900 Secondary Identifier:  ? PAC:30504018
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Glyma.13G346900 0.5kb upstream 0.5kb upstream 9836 true Chr13: 43712945-43722780 Glycine max
Glyma.13G346900 0.5kb upstream 0.5kb upstream 500 false Chr13: 43712945-43713444 Glycine max
Glyma.13G346900 0.5kb downstream 0.5kb downstream 9836 true Chr13: 43713445-43723280 Glycine max
Glyma.13G346900 0.5kb downstream 0.5kb downstream 500 false Chr13: 43722781-43723280 Glycine max
Glyma.13G346900 1.0kb upstream 1.0kb upstream 10336 true Chr13: 43712445-43722780 Glycine max
Glyma.13G346900 1.0kb upstream 1.0kb upstream 1000 false Chr13: 43712445-43713444 Glycine max
Glyma.13G346900 1.0kb downstream 1.0kb downstream 10336 true Chr13: 43713445-43723780 Glycine max
Glyma.13G346900 1.0kb downstream 1.0kb downstream 1000 false Chr13: 43722781-43723780 Glycine max
Glyma.13G346900 2.0kb upstream 2.0kb upstream 11336 true Chr13: 43711445-43722780 Glycine max
Glyma.13G346900 2.0kb upstream 2.0kb upstream 2000 false Chr13: 43711445-43713444 Glycine max
Glyma.13G346900 2.0kb downstream 2.0kb downstream 11336 true Chr13: 43713445-43724780 Glycine max
Glyma.13G346900 2.0kb downstream 2.0kb downstream 2000 false Chr13: 43722781-43724780 Glycine max
Glyma.13G346900 5.0kb upstream 5.0kb upstream 14336 true Chr13: 43708445-43722780 Glycine max
Glyma.13G346900 5.0kb upstream 5.0kb upstream 5000 false Chr13: 43708445-43713444 Glycine max
Glyma.13G346900 5.0kb downstream 5.0kb downstream 14336 true Chr13: 43713445-43727780 Glycine max
Glyma.13G346900 5.0kb downstream 5.0kb downstream 5000 false Chr13: 43722781-43727780 Glycine max
Glyma.13G346900 10.0kb upstream 10.0kb upstream 19336 true Chr13: 43703445-43722780 Glycine max
Glyma.13G346900 10.0kb upstream 10.0kb upstream 10000 false Chr13: 43703445-43713444 Glycine max
Glyma.13G346900 10.0kb downstream 10.0kb downstream 19336 true Chr13: 43713445-43732780 Glycine max
Glyma.13G346900 10.0kb downstream 10.0kb downstream 10000 false Chr13: 43722781-43732780 Glycine max

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310988 5265 Fabidae View MSA
124063578 5270 Rosid View MSA
123743281 5271 Pentapetalae View MSA
122790252 5272 Eudicot View MSA
122049882 5273 Angiosperm View MSA
121348132 5274 Embryophyte View MSA
123427801 5275 Viridiplantae View MSA

26 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 14.9027 0.0 50.8264    
cufflinks 13.2425 0.0 45.0856    
cufflinks 20.0804 0.0 71.2372   High
cufflinks 14.3303 0.0 48.8411    
cufflinks 12.3906 0.0 41.932    
cufflinks 13.4296 0.0 45.4321    
cufflinks 24.5494 0.0 89.1328 High High
cufflinks 12.1139 0.0 40.929    
cufflinks 12.0782 0.0 40.9263    
cufflinks 1.735       Low
cufflinks 4.167       High
cufflinks 2.906        
cufflinks 2.264       Low
cufflinks 2.212       Low
cufflinks 3.697        
cufflinks 3.371        
cufflinks 2.518        
cufflinks 2.749        
cufflinks 2.843        
cufflinks 4.454       High
cufflinks 3.341        
cufflinks 3.678        
cufflinks 2.754        
cufflinks 4.136       High
cufflinks 3.702        
cufflinks 3.018        

0 Strain